Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1771 ATGGAGGGCATACCTAGAAGCGCTTCTAGCTTGGAATTGACCATATCCATCCCTGGTTTTGCTTCTCCTCCTCCTCCTCTTCATTCATCTGCAGGGAGGGAATTAGACATAAACCAAGTACCATCAACAGAAGAGGAATGGATAACAATGGAAGAAGAAGAAGAAATCAGCAATGGAGGAGGAGGAGGAGGAGGAGGAAGTCATCCTCGTAAGAAACTCCGTCTTACCAAGGAACAGTCTCGTCTCCTCGAGGACAGCTTCCGTCTACACCACACTCTCAACCCTAAGCAGAAGGAATCATTGGCAAAGGAGTTGAATCTGAGAGCCAGGCAGGTTGAAGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAATGTGAGTACCTGAAGAGATGGTTTGGATCATTAACAGAACAGAATAAAAGGCTGCATAAGGAAGTGGAGGAGCTTAGGGCATTAAAGGTGGGCCCCCCCACCGTGATCTCCCCCCACGGCTGCCATCCTCTTCCGGCGTCCACCCTAACTATGTGTCCCCGCTGCGAGAAGGTCACCACCACCACCTCCGCCGCCGCTGACAAGGGCCCCACATTGTCTTCTTCCCTTCTATGA 627 0.5136 MEGIPRSASSLELTISIPGFASPPPPLHSSAGRELDINQVPSTEEEWITMEEEEEISNGGGGGGGGSHPRKKLRLTKEQSRLLEDSFRLHHTLNPKQKESLAKELNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNKRLHKEVEELRALKVGPPTVISPHGCHPLPASTLTMCPRCEKVTTTTSAAADKGPTLSSSLL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1771 208 Pfam Homeobox associated leucine zipper 126 159 IPR003106 GO:0006355|GO:0043565
Mibi10g1771 208 Pfam Homeodomain 70 124 IPR001356 GO:0003677
Mibi10g1771 208 Coils Coil 139 159 - -
Mibi10g1771 208 SMART halz 126 169 IPR003106 GO:0006355|GO:0043565
Mibi10g1771 208 CDD homeodomain 69 127 IPR001356 GO:0003677
Mibi10g1771 208 Gene3D - 64 133 - -
Mibi10g1771 208 FunFam Homeobox-leucine zipper protein 18 52 131 - -
Mibi10g1771 208 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Mibi10g1771 208 SMART HOX_1 68 130 IPR001356 GO:0003677
Mibi10g1771 208 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 197 - -
Mibi10g1771 208 SUPERFAMILY Homeodomain-like 57 127 IPR009057 -
Mibi10g1771 208 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1771 Mibi-ChrMibi10 39040397 39045925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1771 33 203 Homeobox Transcription Factor Family AT1G70920 59.218 4.63e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi10g1771 Homeodomain 2.2e-16 CL0123