LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g1718	ATGGGTCTCTGCTTTGGTTCTCTAGCTTTCCGTGGTCACGAGATTAGCCCCAAAAAACCTCAACTTTCAGGATCGGCGAGTTCTGAGAGTAAGAATATTGGGTCATTTACAACAAACAGCACTTTGGAGCAGAGCCAATTCTCTATGATTGCAAATGGAAGTATTGATGGGTCCATTGCTTCTCCAAGCCGGCATGTTATAGAAATGCCTTATGATCTGAAGGTTTTCAGTTTTGGGGATTTGAAAGCTGCTGCCAAGAACTTTAAATCAGATTCATTACTTGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGGATGAGAAGACGCTTTCGCCTGCCAAAGCTGGCTCTGGAATGATGGTAGCTATCAAAAAACTCAACCCTGAGAGTATGCAAGGCTTTCAAGAGTGGCAGTCAGAAGTAAACTTCTTAGGCACCCTTTCTCACCCCAATCTGGTCAAGCTATTTGGTTACTGCATGGAGGATGGTGAACTTCTCCTTGTGTATGAGTTCATGCCCAAGGGAAGCTTGGAGAGTCATCTCTTCAGGAGGATTTCTAATATGGAGCCACTTTCTTGGGATACACGACTCAAAATAGCACTTGGTGCAGCTAAAGGCCTAGCATTCTTGCACACTTCAGAAAAGCAAATCATATACAGAGATTTCAAGGCCTCAAACATATTGCTTGATGGGAGTTTCAATGCAAAAATTTCTGATTTTGGCTTAGCCAAATTAGGGCCTACTGGAGAACAATCACACGTAACTACCAGGATCATGGGTACTTACGGTTATGCTGCCCCAGAATACGTAGCTACAGGGCACTTGTATGTGAAGAGTGATGTGTACGGATTTGGTGTAGTGCTGCTCGAAATGCTGACAGGCTTGAAAGCACTTGATCCAAAGAGGCCATCTGGGCAGCATAATCTGGCTGAGTGGGGTAAGCCATGTCTTACCAGCAAAAAGAAGTTGAAAACCATTATGGATTCCAGAATAGAGGGTCAATATTCACTCAGTGCAGCATTCCAGGCAGCCCAGCTTATTCTTAAGTGCCTAGAACCCGACCCCAAGAATCGCCCTGGTATGAAAGATGTGGTGGAGGCATTGCAAGGTGTTGAAGCTACCCAAAACAAGTGGAACGGCTCCAAGAAAAGTTACCAATCTTCACCTCTTTATCATCATAAGAAGCCTACCAATCACAAATCAGTTCATGATGGCCATAGAAGCGTCAATCTATGA	1242	0.4412	MGLCFGSLAFRGHEISPKKPQLSGSASSESKNIGSFTTNSTLEQSQFSMIANGSIDGSIASPSRHVIEMPYDLKVFSFGDLKAAAKNFKSDSLLGEGGFGKVYKGWLDEKTLSPAKAGSGMMVAIKKLNPESMQGFQEWQSEVNFLGTLSHPNLVKLFGYCMEDGELLLVYEFMPKGSLESHLFRRISNMEPLSWDTRLKIALGAAKGLAFLHTSEKQIIYRDFKASNILLDGSFNAKISDFGLAKLGPTGEQSHVTTRIMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLKALDPKRPSGQHNLAEWGKPCLTSKKKLKTIMDSRIEGQYSLSAAFQAAQLILKCLEPDPKNRPGMKDVVEALQGVEATQNKWNGSKKSYQSSPLYHHKKPTNHKSVHDGHRSVNL	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g1718	413	MobiDBLite	consensus disorder prediction	379	413	-	-
	Mibi10g1718	413	FunFam	Serine/threonine-protein kinase PBS1	174	389	-	-
	Mibi10g1718	413	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Mibi10g1718	413	ProSiteProfiles	Protein kinase domain profile.	88	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi10g1718	413	MobiDBLite	consensus disorder prediction	20	35	-	-
	Mibi10g1718	413	FunFam	Serine/threonine-protein kinase BIK1	54	173	-	-
	Mibi10g1718	413	CDD	STKc_IRAK	94	372	-	-
	Mibi10g1718	413	SUPERFAMILY	Protein kinase-like (PK-like)	65	370	IPR011009	-
	Mibi10g1718	413	MobiDBLite	consensus disorder prediction	379	394	-	-
	Mibi10g1718	413	Pfam	Protein tyrosine and serine/threonine kinase	91	370	IPR001245	GO:0004672\|GO:0006468
	Mibi10g1718	413	MobiDBLite	consensus disorder prediction	16	35	-	-
	Mibi10g1718	413	ProSitePatterns	Protein kinases ATP-binding region signature.	94	127	IPR017441	GO:0005524
	Mibi10g1718	413	Gene3D	Transferase(Phosphotransferase) domain 1	174	395	-	-
	Mibi10g1718	413	Gene3D	Phosphorylase Kinase; domain 1	72	173	-	-
	Mibi10g1718	413	PANTHER	OS01G0588500 PROTEIN-RELATED	41	373	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g1718	Mibi-ChrMibi10	38450645	38454599	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g1718	74	406	Glycoside Hydrolase	AT3G07070	47.904	6.37e-102	307

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Mibi10g1718		PK_Tyr_Ser-Thr	3.6e-48	CL0016