Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1715 ATGCCTAAAGCCAAAAAGACCGATTCCTCCGTCGACGACAATCGGTTGAAGCGTAAGGGCGCTGGAGTTGTGAAGAAACGATCAAGAAAAGCTGCCAAGGATCCGAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGGCTGAGTTCAGAGAGCAGTATAAGAAGGATCATCCAGACAATAAATCAGTCACTGTTGTTGGTAAAGCTGGCGGTGATGAATGGAAAGCCATGTCTGATGCTGATAAAGCTCCCTATGTTGCCAAGGCAGAGAAGAAGAAAGCGGAATATGAGAAAACTATTAAAGCGTACAATATGAGATTGGAGGAAGAGACGGACGACGAGTGA 354 0.4605 MPKAKKTDSSVDDNRLKRKGAGVVKKRSRKAAKDPNKPKRPPSAFFVFMAEFREQYKKDHPDNKSVTVVGKAGGDEWKAMSDADKAPYVAKAEKKKAEYEKTIKAYNMRLEEETDDE 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1715 117 MobiDBLite consensus disorder prediction 1 19 - -
Mibi10g1715 117 CDD HMGB-UBF_HMG-box 38 104 - -
Mibi10g1715 117 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Mibi10g1715 117 SUPERFAMILY HMG-box 23 109 IPR036910 -
Mibi10g1715 117 Coils Coil 89 116 - -
Mibi10g1715 117 MobiDBLite consensus disorder prediction 20 34 - -
Mibi10g1715 117 Gene3D High mobility group box domain 22 117 IPR036910 -
Mibi10g1715 117 SMART hmgende2 37 108 IPR009071 -
Mibi10g1715 117 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 115 IPR031061 -
Mibi10g1715 117 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Mibi10g1715 117 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1715 Mibi-ChrMibi10 38421722 38423462 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mibi10g1715 HMG_box 8.5e-23 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi10g1715 10 38421722 38423462 Mibi10g1715 10 38421722 38423462 ECH