Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1708 ATGTCTTGCTCATCGTCTTCAGGATCCGAGGAAGAAGATGAGGGCTTCGATTCCTACAGAAAAGGAGGGTACCATGCCGTCAGGATCGGCGATCAGTTCGCAGGTGGGAGGTACATAGCGCAGGGGAAGCTCGGGTGGGGTCAGTTTTCCACCGTCTGGCTCGCTTATGATACTCGCAATTCTACATATGTTGCCCTCAAAATCCAGAAAAGTGCAGCCCAGTTTGCTGAGGCTGCCCTTCATGAGATAAATGTTCTTTCATCCATTGCTGAGGGCAACCCTTCGAATTCAAAGTTTGTCGTCCAATTGATTGACCACTTTAAGCACTCAGGCCCAAATGGGCAGCACCACTGCATGGTCCTTGAGTTCCTTGGTGATAGTTTGCTTCGTCTGATCAGATACAGACGTTATAAAGGCCTGCCATTGAATAAAGTTAGAGAAATTTGTAAATGCATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACTCAGACCTAAAACCTGAAAATATCCTTCTCTTATCCACCATTGATCCTGCCAAAGACCCAGTTAGATCAGGACAAAGCCCAATTCTGGAGAGGCCTGAGGGAAGCAATGTTGGATTTTCAAGTGTCATTGAGAAAAAGTTGAAAAGGAGAGCGAGAAGAGCAGTGGCTAAAATATCAGGTAGAAATTCATCATGGGGAGAAGATGGAGGGGTCTCAAAATCTGATAGAAATATTGATGGAATTGATGTGCAGTGCAAGATAGTAGATTTTGGAAACGCATGCTGGGCAGATAAGCCATTTGCAGAAGAAATCCAAACCAGGCAATATAGAGCTCCTGAAGTTATACTGCAGGCTGGGTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCATCACTTTTGAGCTCGCCACAGGTGATATGATGTTCACTCCCAAGCCAGGACAAGGTTTTAGTGAGGATGAGGACCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGGTTGCCATTAGCGGAACAAAATCCAAGGATTTCTTCGACAGGCACGGCGATCTAAAAAGAATCAGGAGGCTAAAATATTGGCCGCTTGACAAATTTTTGATTGATAAATACAAATTTTCGGCGAGTGATGCCCGTGAGTTTTCAGAATTCCTTTTGCCCCTTCTGGATTTTTCACCGGAGAAGCGGCCAACTGCACAACAGTGTTTACAGCATCCATGGCTTAGTGGTTAA 1245 0.4506 MSCSSSSGSEEEDEGFDSYRKGGYHAVRIGDQFAGGRYIAQGKLGWGQFSTVWLAYDTRNSTYVALKIQKSAAQFAEAALHEINVLSSIAEGNPSNSKFVVQLIDHFKHSGPNGQHHCMVLEFLGDSLLRLIRYRRYKGLPLNKVREICKCILIGLDYLHSELGIIHSDLKPENILLLSTIDPAKDPVRSGQSPILERPEGSNVGFSSVIEKKLKRRARRAVAKISGRNSSWGEDGGVSKSDRNIDGIDVQCKIVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACITFELATGDMMFTPKPGQGFSEDEDHLALMMELLGKMPRKVAISGTKSKDFFDRHGDLKRIRRLKYWPLDKFLIDKYKFSASDAREFSEFLLPLLDFSPEKRPTAQQCLQHPWLSG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1708 414 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 217 - -
Mibi10g1708 414 Pfam Protein kinase domain 250 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g1708 414 Pfam Protein kinase domain 40 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g1708 414 SUPERFAMILY Protein kinase-like (PK-like) 32 413 IPR011009 -
Mibi10g1708 414 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Mibi10g1708 414 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Mibi10g1708 414 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g1708 414 FunFam Protein kinase superfamily protein 24 123 - -
Mibi10g1708 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Mibi10g1708 414 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Mibi10g1708 414 FunFam Serine/threonine-protein kinase SRPK 115 412 - -
Mibi10g1708 414 CDD STKc_SRPK 27 412 - -
Mibi10g1708 414 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1708 Mibi-ChrMibi10 38366721 38370004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1708 4 413 EF-hand Containing Proteins AT5G22840 51.627 1.60e-167 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Mibi10g1708 Pkinase 7.8e-23 CL0016