Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1700 ATGATTAACGCTTGGCTTTTGATGCTAATGATCCTCTCTAATGGGATTTCTTCATCTGGGGCTGATGTGAATAATTCAGCAATACCTGAATCTGTAAATATTGGAGCACTCTTCTCTTTCGATTCCACTGTAGGTAGAATTGTAAAAGTAGCTATTGAAGCAGCAGTTGCAGATATAAATTCTGATCCTTCAATTCTTGGAAAAACTAAGCTAAGAGTCTCAATGCAAGAGGACTCCAAATACAGAGGTTTTCTGAGCATTTCTGAGGTCTTGCAGCTCATGGCAACACAAACTCTGGCTATAATTGGCCCCCAGTCATCTATAACAGCTCATGTCATATCTCATGTTGCAAACGAGCTCCAAGTCCCACTCCTTTCATTTTCAGCGACGGACCCTACACTTTCTTCGCTTCAATTCCCATTCTTTGTTAGAACTGCACCCAGTGATGTTTATCAGATGGCTGCAATAGCTGAGCTTATAGACTTCTATGGTTGGAGAGAGGTTATTGCAATTTATGCCGACGATGACCATGGGAGGAATGGAATCGGTTCTTTAGGGGATAAGCTTGCAGAGAGACGTTGTAAAATATCGTATAAAGCGCCAATAAGCCCTGAAGCAACTAAGGAGGAGATTACTGATGTGCTTGTTCAGGTCGCTCTTGCTGAATCTCGGATTATAATTCTTCACACTAATGCTGAATGGGGCCCCAAGGTGTTTAATGTGGCAAAATATCTTGGCATGATGGGAACTGGGTATGTCTGGATAGCCACCAACTTTCTCACTACTCTTTTGGACTCTGAGAGTCCCATCCCTTCAGATCAAATAGATGAAATTCAAGGAGTTCTTACAATGCGTGTGCACACACCTGATTCAGAGCTCAAGAGAAGGTTCTTTTCTAGGTGGAAAAACCTGACTAGGGGGATGACCACTGATAGTCCGCTAGGATTAAACACTTTTGGTCTCTATGCATATGATACCGTTTACATGTTTGCTCATGCACTAGATACATTTTTCAAACAAGGGAACCGAATCACATTCTCATATGATTCAAAGTTATCTCAACTACGTGGAGACAGCTTGCATCTTGATGCAGTGAAAATCTTTGATCAAGGAAATCTGTTGCGTACAAGTATTTATGGGGTTAACATGACTGGTGTAACGGGTCATATCAAGTATGCAGCTGATGGGAATCCTGTGAATCCATCATATGAAATCATCAATGTGATAGGAACTGGTGCAAGGAGGATTGGTTATTGGTCTGATCACTCTGGATTATCTGTTGATCCTCCAGAAGTACTATATTCAAAACCAGCCAATCGTTCCAGTGCAAATCAAAAGCTACTCCCTGTGATCTGGCCTGGAGAAACAACCCAGAAGCCCCGTGGTTGGGTATTTCCAAACAACGGAAGGAACCTAAGAGTTGGAGTGCCGAGAAGGGTTAGTTATCGACCATTTGTCTCACAAATTCAAGGCACCGACATGTTCAAGGGATTCTGCATTGATGTATTCCTTGCTGCGGTGAACTTGCTTCCCTATGCAGTTCCGTATAAGTTTATTCCATTTGGGGATGGTCACAGCAATCCTAGCAACACGGAGCTTGTTCGTCTGATCGCAGCTGGCGTCTTTGATGCTGCAGTGGGGGACATTACAATTACAACAGAAAGAACAAAGATGGTTGATTTCACTCAGCCATATATTGAGTCTGGTCTGGTAGTAGTAGCACCTGTTAAGAAGGTAGAATCCAATGCATGGGCTTTTTTGAGGCCATTTACGCCAATGATGTGGGCTGTCACAGCAATCTTCTTCTTAGTTGTGGGAGCTGTTGTTTGGATCTTGGAACATAGGCTGAATGATGATTTTCGAGGACCCCCTAAAAAGCAAGTTGTGACAATTTTGTGGTTTAGCTTTTCAACCATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTCGTGCTACTTATATGGCTATTTGTGGTTCTGATAATTAATTCAAGTTATACAGCAAGTCTGACGTCAATCCTCACAGTACAACAGCTTTCTTCCCCCATTAAAGGCATTGAAAGTTTAATAAACAGCAAAGAACCTATTGGCTACTTGCAGGGTTCTTTTACTCGTGGTTACTTAGTTGAGGAACTTGGCATTCATGAATCTAGACTCGTTCCCATGAAAACAGGAGATGAGACTGCTAAAGCATTAAAAGCCGGTCCTGGAAAAGGTGGTATTGCTGCATATATCGATGAGCGTGCTTACATTGAGCTCTTCCTTTCAAGCCGGTGTGATTTTACTATTATCGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCTAGAGACTCTCCTTTAGCAATTGACCTTTCTACAGCTCTTCTGGAACTGTCAGAGAATGGAGACCTTCAAAGGATCCATGACAAATGGCTTTTGAATAGTGCATGCCTTGCACAAGGTGCTAAGCTTGAAGTGGACAGACTTGACCTTAAATCCTTCTGGGGTCTCTATTTGGTCTGTGGACTTGCTTGCTTTCTGGCTCTCCTCATCTATCTCATACAGATGATGAGACAGTACTATAAGCACTACTCCGATGAGATAGAGCCTTCCAGCCAGAGCTCGATGTCCTCACGCCTCCGGACTTTCTTGACATTCGTGGACGAGAAAGAGGAGGAAGTTAAGCATCGGTCAAAGAGAAGGCAACTTGAAAGGATCTCATGCAGAAGCAGTTGTAGTACTATTGTGGGTGGATCATTGTCATCATCAACCATATACTCCAACAAAGAATATGCCCAATCCTCTTCAACCAAAAGCTTTGATTGTGCTTATGACGCCTGA 2841 0.4291 MINAWLLMLMILSNGISSSGADVNNSAIPESVNIGALFSFDSTVGRIVKVAIEAAVADINSDPSILGKTKLRVSMQEDSKYRGFLSISEVLQLMATQTLAIIGPQSSITAHVISHVANELQVPLLSFSATDPTLSSLQFPFFVRTAPSDVYQMAAIAELIDFYGWREVIAIYADDDHGRNGIGSLGDKLAERRCKISYKAPISPEATKEEITDVLVQVALAESRIIILHTNAEWGPKVFNVAKYLGMMGTGYVWIATNFLTTLLDSESPIPSDQIDEIQGVLTMRVHTPDSELKRRFFSRWKNLTRGMTTDSPLGLNTFGLYAYDTVYMFAHALDTFFKQGNRITFSYDSKLSQLRGDSLHLDAVKIFDQGNLLRTSIYGVNMTGVTGHIKYAADGNPVNPSYEIINVIGTGARRIGYWSDHSGLSVDPPEVLYSKPANRSSANQKLLPVIWPGETTQKPRGWVFPNNGRNLRVGVPRRVSYRPFVSQIQGTDMFKGFCIDVFLAAVNLLPYAVPYKFIPFGDGHSNPSNTELVRLIAAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVAPVKKVESNAWAFLRPFTPMMWAVTAIFFLVVGAVVWILEHRLNDDFRGPPKKQVVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLINSKEPIGYLQGSFTRGYLVEELGIHESRLVPMKTGDETAKALKAGPGKGGIAAYIDERAYIELFLSSRCDFTIIGQEFTRNGWGFAFPRDSPLAIDLSTALLELSENGDLQRIHDKWLLNSACLAQGAKLEVDRLDLKSFWGLYLVCGLACFLALLIYLIQMMRQYYKHYSDEIEPSSQSSMSSRLRTFLTFVDEKEEEVKHRSKRRQLERISCRSSCSTIVGGSLSSSTIYSNKEYAQSSSTKSFDCAYDA 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1700 946 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Mibi10g1700 946 Pfam Bacterial extracellular solute-binding proteins, family 3 474 812 IPR001638 -
Mibi10g1700 946 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Mibi10g1700 946 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Mibi10g1700 946 Gene3D - 782 812 - -
Mibi10g1700 946 FunFam Glutamate receptor 467 583 - -
Mibi10g1700 946 CDD GluR_Plant 472 812 - -
Mibi10g1700 946 FunFam Glutamate receptor 148 300 - -
Mibi10g1700 946 Gene3D - 583 707 - -
Mibi10g1700 946 Gene3D - 464 582 - -
Mibi10g1700 946 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Mibi10g1700 946 SUPERFAMILY Periplasmic binding protein-like I 26 464 IPR028082 -
Mibi10g1700 946 FunFam Glutamate receptor 709 816 - -
Mibi10g1700 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 880 - -
Mibi10g1700 946 Gene3D - 734 781 - -
Mibi10g1700 946 Gene3D - 148 425 - -
Mibi10g1700 946 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Mibi10g1700 946 PIRSF IGluLR_plant 1 940 IPR017103 -
Mibi10g1700 946 Gene3D - 50 400 - -
Mibi10g1700 946 FunFam Glutamate receptor 583 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1700 Mibi-ChrMibi10 38191287 38194979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1700 5 911 Ion Channels AT3G51480 60.220 0.0 1178