Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1694 ATGAAGCGCGATTTCTACGAAATCTCCGACGACGAATGGGACAACCATTCTTTTAAACCCTCTCGTGTTCTCAAGAAATCACAGTCTTCTTCTCCTCCTCCTAAACCGCCTCCGATCGAGTCCTTTGCTTTTCGTCCTGTTGTTAAGACCGACAATTTTGACCTAAGTAGCGATGATTCCTTCCAATTGGAGGATAATTTGGAGGATGATGATGTGAATGTGGAGCCTGAGGGAGGTAAGCCCGGGGCTGTATCAAATCGTGGCCGTCGATTTGTTGTTGACGATGATGATGAGGAGGAGAGTGAGGGAGATGTTGCGGAGGTGTATGAGATTAAGTCTACTACTGATGAGGAGGAAGTTGAAGAGGAGGGAGTGGATGAAAATGATGTTGTAGGGAGGGCTTTGTATAAGTGTGCTAAGATATCTGCTGAATTGAAAGGAGAGCTGTTTGGTTCATCGGGGACTGTGTGTGAAAGGTATTCTGAGGCGGAATCTTCTTCAGTGAGAATTGTGAATCAGGATGATATTGATGATGTGTGCGGGTCTGAGGATTCTGATTTTCAGCCTATCCTCAAGCCGTATCAGCTGGTTGGTGTCAACTTTTTGCTTTTGTTGTATCGGAAGGGCATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACGGTTCAGGCCATCACATATCTAACCTTGTTGAAACACCTGCATAATGATCCTGGCCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAATTGGGATAGGGAGATGCAAAGGTGGTGCCCATCCTTTTCTGTTCTACAATACCATGGTTCTGGACGAGCAACATATTTCAAGGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTCCACAGCAGAAAGACGATCGCAAAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTGATGGACGAGGCACATGCTTTGAAGGATAAAAATAGTTTTAGGTGGAAGAATCTAATGTCGGTTGCACGCAATGCAAACCAGCGTTTGATGTTGACAGGGACACCTCTTCAAAATGATCTACACGAATTATGGTCATTGTTGGAGTTTATGATGCCAGATATTTTTGCTACAGAAGATGTTGACTTGAAAAAGTTATTGAACACAGAAGATCGAGATTTAGTTGGTCGCATGAAGTCCATCTTGGGTCCATTTATTTTACGGCGACTGAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATTCAACGAGTTGAATATGTTGTAATGGAAGTGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTATTTCACAAGCTCGAATGGCAAAATGTTCGGGGCCTAACTCTAACAATATTCTTGAAGTTCTTCCTCGTCGACAAATTAACAATTATTTTGTTCAGTTTCGCAAGATTGCAAACCATCCCTTGTTGATTAGGCGAATCTATAGCGATGAGGATGTCATTCGCTTTGCTAGGAAGTTACATCCTGTGGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATTGAGGAACTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTCCATTATGGTGTCAATGATAGAAAGGGTGTCCTTCCAGATAGAAGTGTTATGTCTTCTGCAAAATGTCGGGCCTTAGAAGACCTTCTTCCTTCACTTCAAAAAGGTGGTCATCGTGTTTTAATATTTAGTCAGTGGACATCTATGCTTGATATATTGGAGTGGACACTTGATGTCATTGGACTGACCTACAGACGGCTTGATGGAAGCACGCAGGTAACAGAGAGGCAAACAATAGTTGATACATTCAATAATGATACTTCAATATTTGCTTGCTTGCTTTCTACAAGAGCTGGAGGACAGGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGATATGGATTTCAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATAGGATAGGCCAAACGAAGCCTGTAACTATATATCGGCTGGTGACCAAGGGTACAGTTGATGAAAATGTATATGAGATTGCAAAAAGAAAGCTTGTATTGGATGCTGCGGTCCTTGAATCAGGCATGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTTTACTGGGTTAA 2226 0.4218 MKRDFYEISDDEWDNHSFKPSRVLKKSQSSSPPPKPPPIESFAFRPVVKTDNFDLSSDDSFQLEDNLEDDDVNVEPEGGKPGAVSNRGRRFVVDDDDEEESEGDVAEVYEIKSTTDEEEVEEEGVDENDVVGRALYKCAKISAELKGELFGSSGTVCERYSEAESSSVRIVNQDDIDDVCGSEDSDFQPILKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDPGPHLIVCPASVLENWDREMQRWCPSFSVLQYHGSGRATYFKELSYLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNTEDRDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEVQQENAYKEAIEEYRAISQARMAKCSGPNSNNILEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFARKLHPVGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGVLPDRSVMSSAKCRALEDLLPSLQKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSAILLG 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1694 741 SMART helicmild6 596 679 IPR001650 -
Mibi10g1694 741 Pfam Helicase conserved C-terminal domain 567 679 IPR001650 -
Mibi10g1694 741 PANTHER SNF2/RAD54 HELICASE FAMILY 106 719 - -
Mibi10g1694 741 SMART ultradead3 187 392 IPR014001 -
Mibi10g1694 741 Gene3D - 166 441 IPR038718 -
Mibi10g1694 741 FunFam Protein CHROMATIN REMODELING 19 isoform A 162 440 - -
Mibi10g1694 741 MobiDBLite consensus disorder prediction 67 87 - -
Mibi10g1694 741 CDD DEXHc_Snf 191 384 - -
Mibi10g1694 741 Pfam SNF2-related domain 211 497 IPR000330 GO:0005524|GO:0140658
Mibi10g1694 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 417 IPR027417 -
Mibi10g1694 741 CDD SF2_C_SNF 557 690 - -
Mibi10g1694 741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 732 IPR001650 -
Mibi10g1694 741 Gene3D - 552 736 IPR027417 -
Mibi10g1694 741 MobiDBLite consensus disorder prediction 1 44 - -
Mibi10g1694 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 720 IPR027417 -
Mibi10g1694 741 MobiDBLite consensus disorder prediction 1 21 - -
Mibi10g1694 741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 382 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1694 Mibi-ChrMibi10 38124541 38129629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1694 212 714 RAD5 or RAD16-like Gene Family AT5G22750 26.923 1.62e-46 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi10g1694 SNF2_N 6.4e-53 CL0023