Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1620 ATGCTAGCACAGAACTGCAGTTTTGAAGTCAGCTTCATAGTAGACATGGAAGAAGAAGATGAGTATGTGGAGTATGTGCCTGTGGCCAAGCGTAGGGCCATGGAGGCTCAGAAGATTCTTCAGCGAAAAGGAAAATCCTCCTCCACAGTTGATGATGAGTTGGAGAAATCAAGAGTTGCTGAAGCTAAACCTAGTCTTTTGGTTAAGGTGTCACAGTTGAAACGGGATCAACCTGAGATTAGTCCAACGGAGCAGATTGTTCAACAAGAAAAGGAGATGATTGAGAACTTATCAGATCGAAAAACTCTTATGTCTGTTCGGGAATTGGCTAAGGGAATCACCTATACAGACCCTTTGCCTACTGGATGGAAGCCACCTTTGCCAATTAGAAGAATGTCAAGAAAAGCATGTGATTTGATTCGGAAGCAGTGGCATATAATAGTGGATGGTGATGAGATCCCACCCCCAATTAAGAATTTCAAGGATATGAGGTTTCCTGAGCCAATTTTGAAGAAGTTGAAAGAAAAAGGGATTGTTCAACCAACACCTATACAAGTACAAGGCCTTCCTGTGATCTTATCCGGGAGAGATATGATCGGGATTGCATTCACAGGATCAGGGAAGACTCTAGTCTTTGTGTTGCCCATGATTATGGTGGCACTGCAAGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGCTTGATTGTTTGCCCATCAAGGGAACTGGCTAGACAGACTTATGAAGTGGTTGAACAATTCTTGATACCTCTTAGAGAAGCTGGATATCCTGAGCTTAGGCCATTGCTTTGTATTGGTGGGGTAGATATGAGATCACAGCTAGACATTGTGAAGAAGGGTGTTCACATTGTTGTAGCCACCCCTGGGAGGTTAAAGGATATGTTAGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACACTAGATGAGGCTGATAGATTAGTTGATTTGGGATTTGAAGATGACATTAGAGAAGTGTTTGATCACTTCAAAGCTCAAAGACAGACACTCTTATTTTCTGCCACTATGCCAACCAAAATTCAGAATTTTGCTAGAAGTGCTCTAGTGAAACCTGTCATTGTCAATGTGGGTCGAGCAGGGGCTGCAAATCTTGACGTAATCCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTGTATCTCCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAACAAAGCTGATGTGGACGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATACATGGAGGCAAAGATCAGGAAGAGAGAGAGTATGCAATTGCATCCTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCTAAGGGATTGGATTTTCCTGATATTCAGCATGTTATTAACTATGACATGCCTGCTGAAATTGAAAACTATGTTCATAGGATCGGACGAACTGGACGATGTGGCAAGACTGGCATAGCAACAACCTTCATTAACAAGAATCAAACCGAGACAACCTTGCTTGACTTGAAACATCTGTTGCAAGAGGCGAAACAACGTATTCCCCCAGTTTTAGCAGAGCTGAATGATCCAATGGAATACACTGAGGAAATCACAGATAAAAGTGGGGTCAAGGGCTGTGCATACTGTGGTGGTCTTGGTCATCGCATTCGTGACTGTCCCAAATTGGAACATCAGAAGAGCATGGCAATTGCAAATAACAGAAGGGATTATTTTGGTTCTGGTGGATACAGAGGAGAAATATGA 1812 0.4211 MLAQNCSFEVSFIVDMEEEDEYVEYVPVAKRRAMEAQKILQRKGKSSSTVDDELEKSRVAEAKPSLLVKVSQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLPTGWKPPLPIRRMSRKACDLIRKQWHIIVDGDEIPPPIKNFKDMRFPEPILKKLKEKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVALQEEIMMPIVPGEGPFGLIVCPSRELARQTYEVVEQFLIPLREAGYPELRPLLCIGGVDMRSQLDIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIASFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELNDPMEYTEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1620 603 Pfam DEAD/DEAH box helicase 182 361 IPR011545 GO:0003676|GO:0005524
Mibi10g1620 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 519 IPR027417 -
Mibi10g1620 603 CDD SF2_C_DEAD 385 513 - -
Mibi10g1620 603 SUPERFAMILY Retrovirus zinc finger-like domains 561 582 IPR036875 GO:0003676|GO:0008270
Mibi10g1620 603 SMART ultradead3 177 388 IPR014001 -
Mibi10g1620 603 FunFam Probable ATP-dependent RNA helicase DDX41 383 545 - -
Mibi10g1620 603 ProSiteProfiles Zinc finger CCHC-type profile. 562 577 IPR001878 GO:0003676|GO:0008270
Mibi10g1620 603 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 105 544 - -
Mibi10g1620 603 Pfam Zinc knuckle 561 577 IPR001878 GO:0003676|GO:0008270
Mibi10g1620 603 SMART c2hcfinal6 561 577 IPR001878 GO:0003676|GO:0008270
Mibi10g1620 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Mibi10g1620 603 SMART helicmild6 423 504 IPR001650 -
Mibi10g1620 603 Coils Coil 515 535 - -
Mibi10g1620 603 FunFam Probable ATP-dependent RNA helicase DDX41 125 374 - -
Mibi10g1620 603 Gene3D - 383 545 IPR027417 -
Mibi10g1620 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 384 544 IPR001650 -
Mibi10g1620 603 Pfam Helicase conserved C-terminal domain 397 504 IPR001650 -
Mibi10g1620 603 Gene3D - 127 377 IPR027417 -
Mibi10g1620 603 CDD DEADc_DDX41 169 374 IPR044113 GO:0000398|GO:0003724|GO:0005524
Mibi10g1620 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 373 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1620 Mibi-ChrMibi10 37240585 37243592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1620 156 543 Eukaryotic Initiation Factors Gene Family AT3G19760 31.298 3.74e-56 193