LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g1619	ATGAATAGCATCAACGACGACAATTCCACACAAGAAATCGACCCTCAAAGTGACCACAGTTCCGACTATTTACCTCACTCTCTTCCTCTTCAACCTCAGCCTCAGCCTCGCCGCCCTCGTGGCTTCGCCGCCACGGCGGCGGCGGCTGCTAATTCCGCCGGAAAAGGAAAGAAAGAGAGAGAGAAAGAGAAGGAGCGAACGAAGCTTCGAGAACGTCACCGTCGAGCAATCACTAGTCGTATGCTCGCTGGTCTCCGTCAATATGGTAATTTCCCCCTTCCGGCACGTGCGGACATGAATGATGTGCTTGCTGCTCTCGCACGTGAGGCTGGTTGGGTTGTTGAGGCAGATGGTACTACTTATCGTCAGTGTCCACCTCCTTCGCAAATGGCATCATTTGCTGCAAGGTCAGCTGAAACCCCACTCTCTGCAGCTTCTTTAAGAGCTTGCACTTCTAGAGAAACACTAGAGAATCAACCACCAGTTCTTAGAATTGATGAAAGCTTGTCACCTGCGTCCATTGATTCTGTTGTAATTGCAGAGAGGGACTCAAAGAACGAGAAATATCCAAGTGCAAGCCATATCAATTCCGTCGACTGCTTAGAGGCTGATCAGCTTATGCAGGATATTCATTCTGGGGTGCATGAGAATGAATTTATGGGCACACCTCATGTTCCTGTTTATGCAAAACTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTAATTAATCCTGAAGGAATTAGACAGGAGCTAATTCACACGAAGTCTTTAAATTTTGATGGTGTCACTGTGGATTGTTGGTGGGGGATTGTTGAAGGCTGGAGCCCACAGAAATATGTGTGGTCTGGCTATAGGGAACTTTTTAACATTGTCAGAGAATTCAAGTTGAAGTTACAGGTTGTTATGGCTTTTCATGAATATGGAGGGAACGATTCTAATGATCCATTGATTTCTCTCCCACAATGGATTTTGGAGATTGGAAAAGACAACCAGGATATTTTTTTCACCGATCGTGAAGGACAGAGGAATACTGAATGTCTTTCTTGGGGCATTGACAAAGAAAGAGTTCTGAAAGGAAGAACTGGAATCGAGGTCTATTTTGATTTCATGAGAAGCTTTCGGACAGAATTTAATGACTTGTTTGCGGAAGGCCTCATATCTGCTGTAGAAATTGGACTTGGGGCATCTGGCGAGCTGAAATATCCTTCTTTTTCTGAAAGGATGGGATGGAGGTATCCTGGTATTGGTGAGTTTCAGTGTTATGATAAATATCTGCTACAAAGTCTACGCAGAGCAGCCAATTTACGTGGCCACTCTTTTTGGGCTAGAGGACCTGATAATGCTGGACAATACAATTCTATGCCGCATGAAACTGGATTCTTTTGTGAACGAGGTGATTATGACAATTACTATGGGCGCTTCTTCTTGCATTGGTATGCCCAGTCATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCCAACCTGGCTTTTGAGGAAACAAGACTAATTGTCAAGGTTCCTGCTGTATACTGGTGGTACAAGACTGCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCGATGAACCAGGATGGATACTCTCCTGTTTTTGAGGTTCTGAAAAAACATGGTGTGACCATGAAGTTTGTCTGCTTAGGATTTCAACTTTCTAGTCAGGAAGCTGACGAGTCATTGGCTGACCCAGAGGGCTTAACTTGGCAGGTATTGAACTCATCCTGGGATCGAGGGTTGATAGTCTCTGGAGAGAATGCAATACCATGTTATGAGAGAGAAGGCTTCAAGAGACTAGTTGATATAGCGAAGCCAAGAAATGATCCTGATCGCCACCACTTTTTATTTTTTGCATATCAACAACCTTCCATGGTTCAGGGGAATACTTGCTTACCAGAGTTGGATCACTTCATCAAACTCATGCATGGTGACATTACGGGGGACCTGTAA	1974	0.4443	MNSINDDNSTQEIDPQSDHSSDYLPHSLPLQPQPQPRRPRGFAATAAAAANSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQCPPPSQMASFAARSAETPLSAASLRACTSRETLENQPPVLRIDESLSPASIDSVVIAERDSKNEKYPSASHINSVDCLEADQLMQDIHSGVHENEFMGTPHVPVYAKLPAGIINKFCQLINPEGIRQELIHTKSLNFDGVTVDCWWGIVEGWSPQKYVWSGYRELFNIVREFKLKLQVVMAFHEYGGNDSNDPLISLPQWILEIGKDNQDIFFTDREGQRNTECLSWGIDKERVLKGRTGIEVYFDFMRSFRTEFNDLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLLQSLRRAANLRGHSFWARGPDNAGQYNSMPHETGFFCERGDYDNYYGRFFLHWYAQSLIDHADNVLSLANLAFEETRLIVKVPAVYWWYKTASHAAELTAGYHNPMNQDGYSPVFEVLKKHGVTMKFVCLGFQLSSQEADESLADPEGLTWQVLNSSWDRGLIVSGENAIPCYEREGFKRLVDIAKPRNDPDRHHFLFFAYQQPSMVQGNTCLPELDHFIKLMHGDITGDL	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g1619	657	MobiDBLite	consensus disorder prediction	1	28	-	-
	Mibi10g1619	657	Gene3D	Glycosidases	215	655	-	-
	Mibi10g1619	657	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	161	651	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	MobiDBLite	consensus disorder prediction	1	71	-	-
	Mibi10g1619	657	Pfam	Glycosyl hydrolase family 14	244	625	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	575	597	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	519	530	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	468	487	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	537	560	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	280	298	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	302	323	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	395	417	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	259	273	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	502	518	IPR001554	GO:0000272\|GO:0016161
	Mibi10g1619	657	SUPERFAMILY	(Trans)glycosidases	219	653	IPR017853	-
	Mibi10g1619	657	Pfam	BES1/BZR1 plant transcription factor, N-terminal	54	201	IPR008540	-
	Mibi10g1619	657	MobiDBLite	consensus disorder prediction	54	71	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g1619	Mibi-ChrMibi10	37229574	37236013	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g1619	33	653	Glycoside Hydrolase	AT5G45300	67.538	0.0	889

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Mibi10g1619		Glyco_hydro_14	6.1e-85	CL0058