Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1600 ATGGTGGGGGCGAGGATGTCACATATCGTCGGTGGGGTTGGGATGTTGTTTACTGCAGATACGGATGAGGACGGTGAAGATCGTGGGGGTTGGGTGAGGATGGTGAAGATCGTGGGGTTGGGCGAGAAAGGATCAGGCCCTTCATCCACGTGTGATTTGGAGCCGAGCAAATCATTTGATCAGCAAAGTTCACTTTTTCAGTATTTGCCGTTTGGTTTATATCCATGCTTTGACCGCTATAGGTTTGCACTTGCTGTTAGGCCTGTGATGCCCAACGACTTGTTACAGGAGCTTCTAACTGTTGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGAGCATTGATTGAAAGACAAGAGCAGTTGCATGAGAGAAAATCGGAGCTCAAGGCTATACTGGAAGCATGTGAAGAAGAATCTGTAAACCAGGCCAATGGTGGTGCTCCTAGTGCCGTGGAAAATTGGTCTGGGCCATTTGAATGGGATTCTGAAGCAGATGATGTTAGGCTGAATATTTTTGGCATTTCTACATATCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCTGCCGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTCCGTGATGGGATTGCTCTTGTTGTCAGTCCTTTGCTTTCTTTAATTCAGGATCAGGTTATGGGTTTGACTGCTTTAGGGATCCCGGCATACATGTTGACATCGACAACCAGTAAGGAAGATGAGAAGTTCATATACAAGGCTCTGGACAAAGGTGAGGGGGATCTCAAAGTATTGTATGTCACACCAGAGAAGATTTCAAAGAGCAAGAGATTTATGTCAAAACTAGAAAAGTGTCATCATGCTGGCCGTCTCTCTCTAATTTCAATAGATGAGGCACATTGCTGTAGTCAATGGGGTCATGACTTTAGACCTGACTACAAGAACCTTGGTATTCTCAAGACTCAATTCCCTAATGTTCCATTAGTTGCTTTGACTGCAACTGCTACTCAAAGAGTCCAAAATGATCTGATGGAAATGTTGCACATTCCAAGATGTGTGAAATTTGTCAGCACAGTCAACAGACCAAACCTATTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGCAGTTATTGATGAAATAGCTGGATTCATTCAAGAATCTTATCCAAATAGGGAATCTGGGATTGTTTATTGCTTCTCCAGGAAAGAATGTGAACAGGTTGCAATGGAATTAAGGGAGAGGGGAATTTCTGCAGATTACTACCATGCAGATATGGATGTACATGCTCGGGAAAAAGTTCATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACGGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCATCACAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCCGGTAGAGATGGACTCCCATCTGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCCCGACAGAGTTCAATGGTTTTCTACGAAAACACAGGACTGCAAAATTTGTATGACATTGTACGATATTGTCAGTCCAAAAAAAGATGTCGCCGCAGTTCCATTTTCCAGCACTTTGCTGAGCCACCACAAGACTGCAATGGGATGTGTGACAATTGTGCATTTCCAATTGAGGTGAAGGAACTGGAGGTCTCCAGCCATGCGAAGTTGATGATTTCTTTGTTGCAAGATATGCAAGAAAATGATCGGAGATTAACAATGTTACAGTTGGTTGACAAAATGAAAATTAAGCAGAAGGAACTAGGTTTTGAGTTGAAGAAAGAGGAAATGGAGCAGCTCATCTTACAGCTTTTGCTAGAGCGGGTTTTGAAAGAAGAATTTCAGCATACGGCATATGCGACAAATGCTTATGTTGCTGAGGGACCATTGGCCAAGCAAATATTGCTAGGAAAGAAGACAGTCAAGATTGAAATTTCTAGTGAACATAGGGCTAAGGCTGGTGTCAGATCAGTTAAACGTACCCTTGGTTCCTCCGGTCTGGAGGTAAAGCTTGATGAGTTGAGGAAAGAATTATCTTCCATTAATGGAGGAATACTGCCACACTCCGTCTTAACCACTCAACAAATCAGCCTCATAAGTTCTCAAAAACCTAACTCACTAGAACAGTTAGAGAAGATAATTGGAAAACTAAAGACAGAAAAGTATGGAGATAGAATACTGGCGCAAATTGAAATGTATTCTGATTTTAAGCCACCTGATGAGAGAAATGAACAAGGCTCTGAAGTTAGAGCTGCAAAGAGGTCCAAGACCAAGAAGCCTATTGTGCTTGTTGAGAGTAGTGAAGAAGATGAAGCATGA 2388 0.4263 MVGARMSHIVGGVGMLFTADTDEDGEDRGGWVRMVKIVGLGEKGSGPSSTCDLEPSKSFDQQSSLFQYLPFGLYPCFDRYRFALAVRPVMPNDLLQELLTVEVEIQDVEDQIRALIERQEQLHERKSELKAILEACEEESVNQANGGAPSAVENWSGPFEWDSEADDVRLNIFGISTYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKEDEKFIYKALDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQNDLMEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKAVIDEIAGFIQESYPNRESGIVYCFSRKECEQVAMELRERGISADYYHADMDVHAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKKRCRRSSIFQHFAEPPQDCNGMCDNCAFPIEVKELEVSSHAKLMISLLQDMQENDRRLTMLQLVDKMKIKQKELGFELKKEEMEQLILQLLLERVLKEEFQHTAYATNAYVAEGPLAKQILLGKKTVKIEISSEHRAKAGVRSVKRTLGSSGLEVKLDELRKELSSINGGILPHSVLTTQQISLISSQKPNSLEQLEKIIGKLKTEKYGDRILAQIEMYSDFKPPDERNEQGSEVRAAKRSKTKKPIVLVESSEEDEA 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1600 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 512 IPR027417 -
Mibi10g1600 795 MobiDBLite consensus disorder prediction 758 795 - -
Mibi10g1600 795 Gene3D - 135 368 IPR027417 -
Mibi10g1600 795 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 171 596 IPR004589 GO:0004386|GO:0006310
Mibi10g1600 795 MobiDBLite consensus disorder prediction 758 789 - -
Mibi10g1600 795 CDD DEXHc_RecQ1 160 368 - -
Mibi10g1600 795 FunFam ATP-dependent DNA helicase 688 758 - -
Mibi10g1600 795 Coils Coil 98 139 - -
Mibi10g1600 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 535 IPR001650 -
Mibi10g1600 795 ProSiteProfiles HRDC domain profile. 684 763 IPR002121 GO:0003676
Mibi10g1600 795 Pfam Helicase conserved C-terminal domain 399 495 IPR001650 -
Mibi10g1600 795 CDD SF2_C_RecQ 369 505 - -
Mibi10g1600 795 PANTHER DNA HELICASE RECQ FAMILY MEMBER 156 752 - -
Mibi10g1600 795 FunFam ATP-dependent DNA helicase 369 565 - -
Mibi10g1600 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 361 IPR014001 -
Mibi10g1600 795 Pfam HRDC domain 693 752 IPR002121 GO:0003676
Mibi10g1600 795 SMART ultradead3 174 377 IPR014001 -
Mibi10g1600 795 SMART helicmild6 415 496 IPR001650 -
Mibi10g1600 795 FunFam ATP-dependent DNA helicase 135 368 - -
Mibi10g1600 795 Pfam DEAD/DEAH box helicase 180 348 IPR011545 GO:0003676|GO:0005524
Mibi10g1600 795 Pfam RecQ zinc-binding 508 564 IPR032284 -
Mibi10g1600 795 Gene3D HRDC domain 688 756 IPR044876 -
Mibi10g1600 795 Gene3D - 569 670 IPR036388 -
Mibi10g1600 795 FunFam ATP-dependent DNA helicase 569 669 - -
Mibi10g1600 795 Gene3D - 369 565 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1600 Mibi-ChrMibi10 37076624 37093505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1600 404 510 Eukaryotic Initiation Factors Gene Family AT3G19760 20.561 9.59e-07 50.1