Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1597 ATGGGATATGATTCCGATAGCCCCTCACAGGATGGGAGGGATGAAGATGATGATGAAGAATATGAGGAAAATGGCCAGGGCAACCGCTTGCTGGGATTCATGTTTGGAAATGTTGATAATTCTGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGGAGCATCTTTCTGCACTTGCTGACAAGCTGGGTTCTTCCCTGACGGATATAGATTTGTCAGGAAAATCGCCACAAACACAACCTGACGTTGTCGAACAAGACTATGGTGATAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAAATTGCTAATGAAGAGGAAAATTTATTGCCCAAAAAGGAATTTTTTTCAATCGAAGCTTCTTTTGAAGCTTTGAAATCCAGATCTTCTGTCTTTGATGATGAAGATTATGATGAGGAATCTGAAAAGGAGCAGGACTTAGCGAATGACATTTCTGAAGTTAATAACACCTCTTCAACTGGGGAGCTGTCAGAGTCTCTTGTTGATGCATCTAAAGGAGAGAAAAGTCAAGAACTTGAATCACATGATGGTTCACAGCAGTCTGAAGAATTGGACGCTGACTTGCAAAAATCCCAGGAGGAAGGGCCTCAAGTTTTGAAGGGTTCTACTCCATTGCCTGTTTTATGTGTTGAAGATGGAATGGTCATTTTAAGGTTCTCTGAGATTTTTGGTATTCATGAACCTTTGAGAAAGGGAGGGAGGAGAAGCCAACGGCCTTCTATTCCTAGAGAGAGATACAAGTCCTTTAATGTATCTGATATTGTAGAAGAGGACGAAGAGGCATTTTTCAGAGATTCCTCTCACTGTGTCCTGCTAAATAAACAGGCTTGTGCAGTTCAGAATGGTATATCAGAAAGCAGTGATGCAGATTTGGATTTATCAAAATTTGGATTTCTTCATGGAGCTGCCTCAATGACTGTGAAAGATGGCCGACAACAGAAGGACTCTTGTCTTAGTGCTGAACCAATGAAACATGATTGTTCAGGCCTTTCTTGGGAAGGGCATTCTCTCTTGTGTACTGACTTTTATCCCCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCCCCTGCTGCAAGCGACAATAATCATGAGAGCTCTGAAAATTCTGGATCTGCATTGGGGCATCTAGGGTGTGATGAAGGAGAAACTGAAAGTGGGATGTTAAATATCCAGTTGGAGCCGCTGAAGGAATCGGAAGAAAACAGTCATAGTGTATTCTTGTGCAGCTCTCCCGTGTCATTTGAGCCCTTTGGTTCAAGGGATTCTTCAGGAGTTAAAACCTATTCATTGTCAAAGAATCTATTTCATCCGCAACTCTTGAGGTTAGAATCCAGACCTGAAGTGGATATCTCTAATCCTGTAGATGACAGAAGGGAGAATATATCTGAGGAGCGTAATCAAAACGGACTAGTGAAGCATTTCACCCAACTTGCCTTGCAAAACCAAGATATGATGGATGGGTCTTGGTTAGACAAGATTATATGGGAGGAGGTTGATAGACCTATTGTGAAACCAAAGCTAATTTTTGATCTTCAGGACGATCAAATGCACTTTGAAGTTTTGGATGGTAAGGATGGTAGACATCTCCGCCTGCATGCAGGGGCAATGATTTTAAACCGTCCTTTAAAATTAAGCAATGGAGATTTTTCTGAGCTACCTGGACATGGAAATCAGCATGGATGGCGATCCATTGCTAATGACAAACATTATTCAAACAGGAAAACTTCCCAGCAACTGAAATCAAATTCTAAAAAACGCTCAGCTCATGGCGTAAAAGTTTTTCACTCTCAACCTGCGCTGAAGCTTCAGACAATGAAATTGAAACTAAGCAACAAAGATATTGCCAATTTCCACCGACCAAGGGCTTTCTGGTATCCTCATGACAATGAGATGGTTGTCAAAGAACAAGGGAAACTGCCAACACAAGGACCAATGAAAGTTATCATGAAGAGCTTGGGTGGCAAGGGGAGTAAACTGCATGTTGATGCCGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCATCTAAAAAGCTAGATTTAAAACAATTGGAAACAGTGAAAATATTTTATCTTGGGAAGGAACTTCAAGATGAGAAATCACTTTCTGCACAAAATGTTCGACCAAATTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCTAGGGCACAAAGGGTTCCTGGTGAGAACAAATCCCTGCGTCCACCTGGGGCATTCAAGAAAAAGTCTGATCTATCTGTTAAAGATGGACATGTTTTTCTGATGGAGTACTGTGAGGAAAGGCCGTTATTATTAAGCAATGCTGGAATGGGTGCCAGACTTTGTACATACTATCAAAAATGTTCACCAGATGATCAAGGTGGCTCTTTATTACGCAACACAAACAGTAGCTCGGGCCATGTGATATCACTGGATCCCACTGATAAATCTCCATTTCTTGGAGATTTAAAGCCTGGCTGCAGTCAGTCATCATTGGAGACAAACATGTATAGAGCACCCATATTTCCTCATAAAGTGCCATTAACCGACTACCTGCTGGTTCGGTCATCAAAGGGCAAGCTATCATTAAGACGGATTGATAAAGTTAACGTTGTTGGACAGCAGGAGCCTCTTACGGAGGTATTGTCACCTGGAAGTAAGAATCTTCAGACATATATGATGAACAGGCTACTGGTACACCTGTGCCGTGAATTTCAAGCTGCAGAGAAGCGGCACTTACTTCCATGCATTCGTGTAGATGAGCTGCTGTCTCAGTTTCCTTACCTATCAGAAGCTTCTTTTCGCAAGAGAATTAAGGAATATGCTATTTTACAGAAGGGAACAAATGGACAGTCCATTTTGGTCAAAAAGCGAAATTTTCGCATGTGGTCGGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTTTGTGCTTATGAAAGCATGCAAGCTGGTCTCTACCGTCTAAAACATTTAGGAATTACCGAAACTCATCCTACTAATATATCTTCTGCTATGAGTCGGCTTCCTGATGAAGCAATTGCGCTGGCGGCTGCATCTCACATTGAGAGGGAACTACAAATCACTCCATGGAATCTGAGCAGCAATTTCGTTGCCTGCACCAGCCAGGGGAAGGAAAATATTGAGCGATTGGAAATCACTGGTGTTGGTGATCCATCTGGGCGTGGTTTGGGTTTCAGCTATGCCCGGGCTCCTCCAAAGACACCGGTGTCAAGCACAGTGGTGAAGAAGAAAACAGCTGCTGCTCGGGGTGGTTCCACTGTTACTGGAACAGATGCTGATCTACGCAGATTGAGCATGGAGGCTGCACGAGAGGTTCTTATTAAGTTCAATGTTCCTGAGGAAGTCATTGCTAAACAAACCAGGTGGCATCGAATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCAGCATCTGGAGTTAAGGTCGACCCAACAACTATTAGCAAATATGCTCGTGGCCAGCGTATGTCCTTTCTTCAGTTACAGCAGCAGACGAGGGAGAAGTGCCAGGAAATTTGGGATAGACAAGTTCAAAGTCTTTCAGCTGTGAATGGTGATGAAAATGAGAGTGATTCTGAAGGAAATAGCGATCTAGATTCTTTTGCTGGTGATCTAGAAAATTTACTTGATGCTGAGGAGTGCGAAGAGGGAGAAGAGGGTACCGATGATTTTAAACGTGACAAGGCTGATGGTGTTAAGGGTCTTAAAATGAGAAGACGTCCAACCTTAGCCCAGGCTGAGGAGGAAATAGAAGATGAAGCCGCTGAGGCTGCTGAACTATGCAGATTACTCATGGATGACGATGATGATGATAGAAAGAAGAAGAAAAAGACTAAATTTATTGTGGAGGAAGCAGGAGTAATTCCAAAACTACAGCCGAGATTTGTCTTTGACAATACAGATCAGGTGAAGCAAATAACTAATACTGTGCAACTAGATGGAGCCAATATATTGAAAGAAAATACAGTTACAAATCTCAGGGAGGAGGATGGCATTTCTGCTAAAAAAAGCAAATCACTGAAGGTCAATAAGACTAAGAAGAGTGACCTTTCACCTATTAGTGTGTCAAATAAGAAAATAAAGTTAAATATTGGGGAACCTCCAAAGGTATTCAAGGAGAAAAAGCCGTCAAGGGAAAGTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGAGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCCAGAAGCTCAACCTGAATCTACAGACACGGAAAAACCTGGAAAGTCAAGCTGGTTGGACCCTTCTGGTCAGTCCCAGCAAAAAACTATTTCCAAGAAGCTTATTACAAAGAGCTCATCAAAAATTGTTCTGGTTGAAGCTTCTGATGGAGAAAAAAGTAGTTTGAAGACTAAAGTTCTTCCAGTGAAGTTCAAATGCGGCTCTGCTGAAAAACCTGTTATTGAAACCACACAGAGCTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCCAAGTCCGCTAAGATTGGTAGAATCTTGATTTCCAACAAAGTGAAGTCAGATGATATGCAAGCTGAGTCTCGTAAACATGCCATTGCCATTCGTCCTCCAACTGATCCAAGTAGAAGTCAAGTTGATTCTCATCACAAGCCGTCAATTAAAATTCGACCACCTACAGAAACAGATAGGGAGCAGCCTCAAAAGAAAATTATTATAAAACGCACAAAGGATGTTAATGATCCGGACCAGTTCAGTCCTGGTGAAAATATGGGATTCGAGCGCAGAAAAACAAAAAGAATTGTTGAATTGTCAAATTTTGAGAGGCACAGAAAACAGGAGATCATGTATAGACCTGAAGCCGCACTGGTAAAGCAGAAAGCTAAAGAGGATAGAAGATGGCAGGATGAGCAAGAGAGAAGGAGGAAAGAAGAAAGACTCCGAAAAGAAGACAGACTCTGGGAAGCAGAACACTCAAGGGGGCTTCATGACAGAGAAGTGAAGATGCTAAAAGAGCAAGAAAGGTTAGATGAGTTGAAAAGATATGAAGAAGATATTAGGAGAGAGAGGGAGGAGGAAGAACGGCAGAAAGCAAAGAAGAAGAAGAAGAAAAAGGCCGAGTTTATAGATGAGTATATAGATGACCATAGAACAAGATTTAATAACAGAGTGTTAGAAAGAGAACGGAGTGGAAAAAGAAGATCTGTTGTTGAGTTGGGAAGGTATGCAGCCGAATATACACCGCCACCAAAGCGACGCAGAGGTGGAGGGGGAGAGGTTGGTTTGGCAAATGTTTTGGAACGCATTCTTGAGGCGCTCAAAGAACGGTATGACCTGTCATACCTTTTCTTGAAACCCGTGTCCAAGAAAGAAGCTCCCGATTACCTGGACATTATAGAGAGGCCCATGGATCTCTCAAGCATCAGGGATAGAGTGAGGAGTATGGAGTACAAAAGCCGGGAAGATTTCAGACACGATGTGTGGCAGATAGCATATAATGCCCACAAATATAATGATGGGAGAAACCCAGGAATTCCTCCTCTTGCTGATCAACTTTTAGAACTTTGTGATTTTTTGTTGAATGAGAATGATGATAGCCTAACTGAAGCTGAAGCTGGTATTGAAACTAGGGATTTCTAG 5688 0.4209 MGYDSDSPSQDGRDEDDDEEYEENGQGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGSSLTDIDLSGKSPQTQPDVVEQDYGDKAEDAVDYEDIDEEYDGPETEIANEEENLLPKKEFFSIEASFEALKSRSSVFDDEDYDEESEKEQDLANDISEVNNTSSTGELSESLVDASKGEKSQELESHDGSQQSEELDADLQKSQEEGPQVLKGSTPLPVLCVEDGMVILRFSEIFGIHEPLRKGGRRSQRPSIPRERYKSFNVSDIVEEDEEAFFRDSSHCVLLNKQACAVQNGISESSDADLDLSKFGFLHGAASMTVKDGRQQKDSCLSAEPMKHDCSGLSWEGHSLLCTDFYPLDQQDWEDEIIWGNSPAASDNNHESSENSGSALGHLGCDEGETESGMLNIQLEPLKESEENSHSVFLCSSPVSFEPFGSRDSSGVKTYSLSKNLFHPQLLRLESRPEVDISNPVDDRRENISEERNQNGLVKHFTQLALQNQDMMDGSWLDKIIWEEVDRPIVKPKLIFDLQDDQMHFEVLDGKDGRHLRLHAGAMILNRPLKLSNGDFSELPGHGNQHGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPRAFWYPHDNEMVVKEQGKLPTQGPMKVIMKSLGGKGSKLHVDAEETLSSVKAKASKKLDLKQLETVKIFYLGKELQDEKSLSAQNVRPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGARLCTYYQKCSPDDQGGSLLRNTNSSSGHVISLDPTDKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKVNVVGQQEPLTEVLSPGSKNLQTYMMNRLLVHLCREFQAAEKRHLLPCIRVDELLSQFPYLSEASFRKRIKEYAILQKGTNGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERLEITGVGDPSGRGLGFSYARAPPKTPVSSTVVKKKTAAARGGSTVTGTDADLRRLSMEAAREVLIKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTDDFKRDKADGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDDDDRKKKKKTKFIVEEAGVIPKLQPRFVFDNTDQVKQITNTVQLDGANILKENTVTNLREEDGISAKKSKSLKVNKTKKSDLSPISVSNKKIKLNIGEPPKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDPEAQPESTDTEKPGKSSWLDPSGQSQQKTISKKLITKSSSKIVLVEASDGEKSSLKTKVLPVKFKCGSAEKPVIETTQSSDKPVTSDSETAKSAKIGRILISNKVKSDDMQAESRKHAIAIRPPTDPSRSQVDSHHKPSIKIRPPTETDREQPQKKIIIKRTKDVNDPDQFSPGENMGFERRKTKRIVELSNFERHRKQEIMYRPEAALVKQKAKEDRRWQDEQERRRKEERLRKEDRLWEAEHSRGLHDREVKMLKEQERLDELKRYEEDIRREREEEERQKAKKKKKKKAEFIDEYIDDHRTRFNNRVLERERSGKRRSVVELGRYAAEYTPPPKRRRGGGGEVGLANVLERILEALKERYDLSYLFLKPVSKKEAPDYLDIIERPMDLSSIRDRVRSMEYKSREDFRHDVWQIAYNAHKYNDGRNPGIPPLADQLLELCDFLLNENDDSLTEAEAGIETRDF 1895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1597 1895 Coils Coil 1269 1289 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1502 1522 - -
Mibi10g1597 1895 Pfam Protein of unknown function (DUF3591) 586 1153 IPR022591 -
Mibi10g1597 1895 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1894 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 375 402 - -
Mibi10g1597 1895 Pfam Zinc knuckle 1409 1428 IPR041670 -
Mibi10g1597 1895 SMART ubq_7 667 739 IPR000626 GO:0005515
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 93 114 - -
Mibi10g1597 1895 SUPERFAMILY Ubiquitin-like 637 737 IPR029071 -
Mibi10g1597 1895 Gene3D - 21 71 IPR036741 -
Mibi10g1597 1895 Gene3D - 649 739 - -
Mibi10g1597 1895 SMART bromo_6 1771 1881 IPR001487 GO:0005515
Mibi10g1597 1895 FunFam Transcription initiation factor TFIID subunit 1 649 739 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1420 1462 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 70 84 - -
Mibi10g1597 1895 Pfam Bromodomain 1782 1857 IPR001487 GO:0005515
Mibi10g1597 1895 CDD Ubl_TAFs_like 667 738 - -
Mibi10g1597 1895 ProSiteProfiles Ubiquitin domain profile. 667 737 IPR000626 GO:0005515
Mibi10g1597 1895 ProSiteProfiles Bromodomain profile. 1791 1861 IPR001487 GO:0005515
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1 34 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1208 1227 - -
Mibi10g1597 1895 ProSitePatterns Bromodomain signature. 1796 1853 IPR018359 -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 179 208 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1642 1663 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 575 613 - -
Mibi10g1597 1895 Gene3D - 1683 1894 IPR036427 GO:0005515
Mibi10g1597 1895 SUPERFAMILY TAF(II)230 TBP-binding fragment 23 62 IPR036741 -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 68 119 - -
Mibi10g1597 1895 CDD Bromodomain 1782 1876 - -
Mibi10g1597 1895 Pfam Ubiquitin family 672 739 IPR000626 GO:0005515
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 139 221 - -
Mibi10g1597 1895 Coils Coil 1685 1727 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1538 1552 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 377 394 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1440 1462 - -
Mibi10g1597 1895 PRINTS Bromodomain signature 1824 1842 IPR001487 GO:0005515
Mibi10g1597 1895 PRINTS Bromodomain signature 1794 1807 IPR001487 GO:0005515
Mibi10g1597 1895 PRINTS Bromodomain signature 1808 1824 IPR001487 GO:0005515
Mibi10g1597 1895 PRINTS Bromodomain signature 1842 1861 IPR001487 GO:0005515
Mibi10g1597 1895 SUPERFAMILY Bromodomain 1763 1884 IPR036427 GO:0005515
Mibi10g1597 1895 Coils Coil 148 168 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 161 177 - -
Mibi10g1597 1895 Pfam TATA box-binding protein binding 18 65 IPR009067 -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1559 1598 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 1500 1613 - -
Mibi10g1597 1895 MobiDBLite consensus disorder prediction 592 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1597 Mibi-ChrMibi10 37009327 37033799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1597 667 737 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 33.803 4.95e-06 47.0