Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1557 ATGGGTAAGAAACAACGTGATGCCGCCATAACCAGCGATCAAGTAGCCGAGGAAGCTCCCGATTACTCTGCAATCAAAGCAGAGAGGAAGAAAAAGAAGAAGAATAAGAGAGATAAGGAAAACGTCGACAGCCCCAAAAGAAAGCTTGACGAAATTGAGATCCACGATAGCCCGGAACCGAAAACCAAGAAGAGTAAGAAGGACAAGAAGTCCCAAAAAATTGAGGAGGAAACAGTTGCCGTTGAAACAAATGGGGCAGAGAATGGTGGAGAGGATGAATCAGAGAGAGATGGGCATGTGGTGGTCACTGGGAAGAACATTAAAGATGAGAAGTATGCGCCTACGAAGACTTTTTCCTCTTCTGGGCTTCCAAAGGAAGTGTTGGAGTGTTGCAAAAGTTTTGAAAAACCGTCTCCTATTCAGTCCAGAGCTTGGCCTTTCTTGTTGAATGGTCGTGATTTAATTGGCATTGCAGCTACTGGGTCAGGAAAAACATTAGCTTTTGGAATACCAGCAATGATGCATGTTTTGGGCAAGCGCAAGGGTAATAAAGCGTCAAAGGGTCGGAGTCCTCTCTGCCTTGTGCTCTCTCCCACTAGGGAGCTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGTACGTCTAGTGGTGTGGAGTCCATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATATCTGCATTAAAATCTGGCGTTGACATTGTCATTGGAACTCCAGGTCGTATAAAGGATCTGATTGAAATGGGTGTACTTTCGTTGAAAGAGGTTTCATTTGTGGTGCTTGATGAAGCAGATCGAATGCTTGACATGGGATTTGAACAAATAGTTCGCTCCATACTGGGTCAGACTTGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTCCATAACTTAGCTCAAGAGTTCATGGATCCTAACCCTGTGAAAGTTGTTGTAGGATCAGAGGACTTAGCTGCCAATCATGATGTTATGCAGATAATTGAGGTCCTGGATAATGCTTATTCACGAGAGAAACGCCTGGTTGCTTTGCTAGAAAAGTACCACAAATCGCAGAGGAATAGAGTATTGGTTTTTGTCTTATACAAAAAGGAAGCCAAAGGCGTTGAAGATATGCTTAATCAAAGAGGCTGGAAGGCTGTCTCGATACATGGGGATAAGGCACAATATGAACGTACAAAGGCCTTATCGTTATTCAAGAATGGAAGTTGTCCTCTGATGGTTGCCACTGATGTGGCTGCACGGGGATTAGATATTCCAGACGTTGAAGTTGTGATCAATTACAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGTAGGACAGGACGAGCTGGGAAGAAAGGCGTTTCCCATACGTTTTTCACAGCACATAACAAGGCACTTGCTGGGGAGCTTGTGAATGTTTTAAGAGAAGCAAATCAAATTGTGCCTGATGATCTCTTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCAAAACTGTACGGAGCTCACTTCAAGGAGATTTCTGCTGATGCTCCCAAGTCAAAGAAGATAACATTTGACGACTCTGATGAAGATTAA 1611 0.4339 MGKKQRDAAITSDQVAEEAPDYSAIKAERKKKKKNKRDKENVDSPKRKLDEIEIHDSPEPKTKKSKKDKKSQKIEEETVAVETNGAENGGEDESERDGHVVVTGKNIKDEKYAPTKTFSSSGLPKEVLECCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVLGKRKGNKASKGRSPLCLVLSPTRELAQQISDVMCDAGTSSGVESICLYGGTSKGPQISALKSGVDIVIGTPGRIKDLIEMGVLSLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHNLAQEFMDPNPVKVVVGSEDLAANHDVMQIIEVLDNAYSREKRLVALLEKYHKSQRNRVLVFVLYKKEAKGVEDMLNQRGWKAVSIHGDKAQYERTKALSLFKNGSCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTAHNKALAGELVNVLREANQIVPDDLLKFGTHVKKKESKLYGAHFKEISADAPKSKKITFDDSDED 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1557 536 Gene3D - 327 503 IPR027417 -
Mibi10g1557 536 MobiDBLite consensus disorder prediction 1 99 - -
Mibi10g1557 536 CDD DEADc 134 324 - -
Mibi10g1557 536 FunFam ATP-dependent RNA helicase RhlB 326 504 - -
Mibi10g1557 536 SMART helicmild6 380 461 IPR001650 -
Mibi10g1557 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 500 IPR001650 -
Mibi10g1557 536 Coils Coil 536 536 - -
Mibi10g1557 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 474 IPR027417 -
Mibi10g1557 536 Pfam Helicase conserved C-terminal domain 353 461 IPR001650 -
Mibi10g1557 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 62 496 - -
Mibi10g1557 536 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Mibi10g1557 536 SMART ultradead3 133 340 IPR014001 -
Mibi10g1557 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 142 IPR014014 GO:0003724
Mibi10g1557 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 323 IPR014001 -
Mibi10g1557 536 CDD SF2_C_DEAD 337 470 - -
Mibi10g1557 536 Pfam DEAD/DEAH box helicase 139 309 IPR011545 GO:0003676|GO:0005524
Mibi10g1557 536 MobiDBLite consensus disorder prediction 37 77 - -
Mibi10g1557 536 Gene3D - 62 326 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1557 Mibi-ChrMibi10 36591793 36603610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1557 134 481 Eukaryotic Initiation Factors Gene Family AT1G72730 34.483 3.39e-56 192