LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g1523	ATGGGTAGGCCACCATGTTGTGAGGAGACAGGTGTGAAGAAAGGGCCATGGACGCCTGAAGAAGATGATAAGCTTATGGCTTATATCAGTAAACATGGAAGTGGGAATTGGAGAACTCTTCCAAAACATGCAGGCCTCAATAGATGCGGCAAGAGTTGCAGGTTAAGGTGGACCAATTATCTCAGGCCTGATATTAGGAGAGGCAAATTCAGTGAAGAAGAAGAGAAATTGATCATCAACCTTCATTCCGTTCTTGGAAACAAGTGGTCGAAGATTGCGACGCATCTTGCAGGGAGGACTGACAATGAGATTAAGAATTTCTGGAACACTAATTTGAGGAAGAAGCTTCTACAGATGGGTATTGATCCAGAAACTCATAAGCCAAGAACTGACTTTAAGCATTTCTTGAATCTCTCACTGTTGCTTGGCATGTCTAATACTAATAACTTGATGGCGAACCCTGCTTGGGGCCATGGGGGTCTTGTGGGTTTATTACAGCAACCAGATTTGAGCCATCAATTAGCCCAAATCCAACTTCTCCAGAATCTCTTGCAGCTTATGAATGCCAATCCATCATCTTTTGTCAATAACATACAGAGTAGTCTCCCACTTTTGGGCAATCAAAGGTTGATGAATGTTCCAATGGAAGCAGCTGATACTCTCCCCAACAACTTGAGAAACCAAGAGTTATATGGAAGCCCTACTGCTCTATTTCCTTCAATAGCAACAAGTGATCAATCAGGCCATGATGATATTTCAGAATCACAGACAGATCTAGAAGAAGGAGCATCAGATCAACAACAAAGTTTGGGTGTTAATAATAGTCTCAGCAGAACTTCATCACATGAATTGAACGAAGCTGATGAAAATCCATTTGCTGCAACCAGTTCAGGAAGCTTCAACCAAATGGAGAGCTCTAATGGTGATGATGTTCCACCCACAGTCTTTGATCCTTGGGAAAAACTCTTGGAAGATGATTATGCAAGCGATTCCTATTGGAAAGAATTTTCTGAGTAA	1017	0.4189	MGRPPCCEETGVKKGPWTPEEDDKLMAYISKHGSGNWRTLPKHAGLNRCGKSCRLRWTNYLRPDIRRGKFSEEEEKLIINLHSVLGNKWSKIATHLAGRTDNEIKNFWNTNLRKKLLQMGIDPETHKPRTDFKHFLNLSLLLGMSNTNNLMANPAWGHGGLVGLLQQPDLSHQLAQIQLLQNLLQLMNANPSSFVNNIQSSLPLLGNQRLMNVPMEAADTLPNNLRNQELYGSPTALFPSIATSDQSGHDDISESQTDLEEGASDQQQSLGVNNSLSRTSSHELNEADENPFAATSSGSFNQMESSNGDDVPPTVFDPWEKLLEDDYASDSYWKEFSE	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g1523	338	MobiDBLite	consensus disorder prediction	290	309	-	-
	Mibi10g1523	338	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Mibi10g1523	338	FunFam	Transcription factor MYB39	69	130	-	-
	Mibi10g1523	338	FunFam	MYB-related transcription factor	13	66	-	-
	Mibi10g1523	338	MobiDBLite	consensus disorder prediction	238	317	-	-
	Mibi10g1523	338	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Mibi10g1523	338	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Mibi10g1523	338	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Mibi10g1523	338	Gene3D	-	68	134	-	-
	Mibi10g1523	338	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Mibi10g1523	338	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	277	-	-
	Mibi10g1523	338	SMART	sant	66	114	IPR001005	-
	Mibi10g1523	338	SMART	sant	13	63	IPR001005	-
	Mibi10g1523	338	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Mibi10g1523	338	CDD	SANT	16	61	IPR001005	-
	Mibi10g1523	338	Gene3D	-	13	66	-	-
	Mibi10g1523	338	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	12	61	IPR017930	-
	Mibi10g1523	338	MobiDBLite	consensus disorder prediction	259	281	-	-
	Mibi10g1523	338	CDD	SANT	69	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g1523	Mibi-ChrMibi10	36221589	36222884	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g1523	1	338	MYB Transcription Factor Family	AT5G16770	44.348	2.65e-81	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi10g1523		Myb_DNA-binding	1.8e-16	CL0123