LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g1522	ATGGGTAGGCCACCATGTTGTGAGGAGACAGGTGTGAAGAAAGGGCCATGGATGCCTGAAGAAGATGATAAGCTTATGGCTTATATCAGTAAACATGGAAGTGGAAATTGGAGAACTCTTCCAAAACATGCAGGCCTCAATAGATGCGGCAAGAGTTGCAGGCTAAGGTGGACCAATTATCTCAGGCCTGATATCAGGAGAGGCAAATTCACTGAAGAAGAGGAGAAATTGATCATCAACCTTCATTCTGTTCTTGGAAACAAGTGGTCAAAGATCACAACGCACCTTCCAGGGAGGACTGACAATGAGATTAAGAATTTTTGGAACACTAATTTGAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGAGACTCACAAACCAAGAACTGACTTCAAGCATCTCTTGAATCTCTCTCAGTTGCTTGGCATGGCTAATACTAACAACTTGATGATGAGCCCTGCTTGGATCCATGGGGGTCTTGTGGGTTTATTACAGCAACCACATTTGAGCCATCAATTAGCCCAAACCCAACTTCTCCAGAATCTCTTGCAGCTTATGAATGCCAACTCATCATCTTTTGTCAGTTACATGCAGAGTAGTCTCCCACTTTTGGGCAATCAAAGTTTGATAAATAATAATCCAATGGAAGCAGCTGATAGAAATGGTACTCTCCCCAACAACTTGAGTAACCAAGAGTTATATGCAAGCCCTACTGCTCTATTTCCTTCAATAGCACCAAGTAATCAATCAGGCCATGAAGTTTCAGAATCAGGTACGGACCTAAAAGAAGGAGCATCAGATCAACAAAGTTTGGGTAATAATAATAGTCTCAGCAGAACTTCATCACATGAATTGAATGAAGCTGATGAAAACCCATTTGCTGCTACCAGTTCAGGCAGCTTCAACCAAATGGAGAGCTTTAATGATGCTGATGGAGTTCCATCCACAGTCTTTGATCCTTGGGAAAAACTCTTGGAAGATGATTATGCCAGCGATTCCTATTGGAAAGAACTTTTTGAGTAA	1026	0.4201	MGRPPCCEETGVKKGPWMPEEDDKLMAYISKHGSGNWRTLPKHAGLNRCGKSCRLRWTNYLRPDIRRGKFTEEEEKLIINLHSVLGNKWSKITTHLPGRTDNEIKNFWNTNLRKKLLQMGIDPETHKPRTDFKHLLNLSQLLGMANTNNLMMSPAWIHGGLVGLLQQPHLSHQLAQTQLLQNLLQLMNANSSSFVSYMQSSLPLLGNQSLINNNPMEAADRNGTLPNNLSNQELYASPTALFPSIAPSNQSGHEVSESGTDLKEGASDQQSLGNNNSLSRTSSHELNEADENPFAATSSGSFNQMESFNDADGVPSTVFDPWEKLLEDDYASDSYWKELFE	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g1522	341	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Mibi10g1522	341	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Mibi10g1522	341	MobiDBLite	consensus disorder prediction	242	318	-	-
	Mibi10g1522	341	Gene3D	-	68	135	-	-
	Mibi10g1522	341	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Mibi10g1522	341	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Mibi10g1522	341	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Mibi10g1522	341	FunFam	MYB-related transcription factor	13	66	-	-
	Mibi10g1522	341	MobiDBLite	consensus disorder prediction	292	311	-	-
	Mibi10g1522	341	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Mibi10g1522	341	CDD	SANT	16	61	IPR001005	-
	Mibi10g1522	341	FunFam	Transcription factor MYB39	69	130	-	-
	Mibi10g1522	341	SMART	sant	13	63	IPR001005	-
	Mibi10g1522	341	SMART	sant	66	114	IPR001005	-
	Mibi10g1522	341	MobiDBLite	consensus disorder prediction	242	283	-	-
	Mibi10g1522	341	PANTHER	F14D16.11-RELATED	1	327	-	-
	Mibi10g1522	341	Gene3D	-	13	66	-	-
	Mibi10g1522	341	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	12	61	IPR017930	-
	Mibi10g1522	341	CDD	SANT	69	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g1522	Mibi-ChrMibi10	36204543	36205850	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g1522	1	341	MYB Transcription Factor Family	AT5G16770	45.125	1.57e-85	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi10g1522		Myb_DNA-binding	1.1e-14	CL0123