Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1516 ATGGCTTCTCTTGGGAATCCCAGAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCCCAAGGATTTTGTAGTCTTTACTGTCCACAATGGTGTTACATAGTGTATCCTCCTCCTCCTCCATTCGAAGTACCAGAAGACAATTCAAGTCCTAATTTTTCACCTCTGGTTGTAGCAGTCATTGGAATCTTGGCCAGTGCTCTTCTTCTTGTGAGTTATTATACCATAATCTCCAGGTATTGTGGCAACAACAACCCAGAATCCTCTTCAGAAAGACAGAATCTTGAACTTGAACAATTTCATGATCCTAATTCTCTTCATGAGCCATCATGGCAAGTGTCACCAATTGGTCTAGACGAAGCTCTGATCAAATCCATCACAGTTTGTAAGTACAAGAAAGAAGATGGGTTGGTTTCTGTATCAGATTGCTCTGTTTGCCTCTCTGAATTCGAAGAAGATGAAAGTATCAAGCTTTTGCCTAAGTGCAGCCATGCTTTTCACATCCCTTGTATTGACACGTGGCTCAAATCTCACTCTTCTTGTCCTCTCTGTCGTGCTGGGATTTTCACCTTCAATGATTCTCCTCTTCTGGTTTCTGATTCCACCATGGAGAATTCAACTTCCCGGGAAAATCAACATGGGAATGAGAACGATGAAGTAGTGTTGGGTTTAACAGAGGAAGAGAGAAATGAAGAAACCAGACAATGTTGTACAGCTCCGAAGCCTACATTGCGTGCAATGAGTGATTTGGGAAATTTGCAGGGAAGGCATAGTGTGATTGAGATTAAAGATGAAGGGTATGTTGAGCCATTTACAAGGTCGGTTTCTATGGACCATTCATTTCAATGTGGAAACAGAGTAGTAGTAGAAGAAGAAGAAGAAGGCTCTGTGAATGAAGCAGGTCCATCAAAGAGATCTAATGGCAGAAGAAGAGTATTACAGAGTGTGTTGAGTCCGATTGTAATGAAGAGATCATTTTCAAGTGGAAGATTCTCTATCAGAAGAGGAAGGCAGGGGATAATCCATATCTGA 1032 0.4147 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFEVPEDNSSPNFSPLVVAVIGILASALLLVSYYTIISRYCGNNNPESSSERQNLELEQFHDPNSLHEPSWQVSPIGLDEALIKSITVCKYKKEDGLVSVSDCSVCLSEFEEDESIKLLPKCSHAFHIPCIDTWLKSHSSCPLCRAGIFTFNDSPLLVSDSTMENSTSRENQHGNENDEVVLGLTEEERNEETRQCCTAPKPTLRAMSDLGNLQGRHSVIEIKDEGYVEPFTRSVSMDHSFQCGNRVVVEEEEEGSVNEAGPSKRSNGRRRVLQSVLSPIVMKRSFSSGRFSIRRGRQGIIHI 343
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1516 343 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Mibi10g1516 343 Pfam Ring finger domain 142 185 IPR001841 -
Mibi10g1516 343 SMART ring_2 143 184 IPR001841 -
Mibi10g1516 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 191 IPR013083 -
Mibi10g1516 343 CDD RING-H2_PA-TM-RING 142 185 - -
Mibi10g1516 343 FunFam RING-H2 finger protein ATL54 118 191 - -
Mibi10g1516 343 PANTHER RING-H2 FINGER PROTEIN ATL16 41 310 IPR044600 GO:0016567|GO:0016740
Mibi10g1516 343 SUPERFAMILY RING/U-box 123 191 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mibi10g1516 Mibi-ChrMibi10 36137173 36138204 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1516 1 242 C3H Transcription Factor Family AT3G03550 47.126 6.63e-69 218