Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1484 ATGGGAAGAGGGAAGATTTTGATAAAAAGGATTGAAAATACAGCAAGCAGGCAAGTGACTTTCTCTAAAAGGCGAAAGGGATTGTTGAAGAAAGCGAGAGAGCTTTCAATTCTTTGTGATGTAGAAGTTGGACTCATCATTTTCTCCAGTACTGGAAGGCTTCATGAATATGCTTCCACCAGCATAAAATCAGTGGTTGAGAGATATAACAGCTCGAAGGAGGAACATGAAAGATTGACGAATCCAGAATCAGAAATCAAGTTCTGGCAAAAGGAGGCAGAAATATTGAGGCAGCAAGTACATAATCTACAAGAAACCCATAGAACAGCTTTATGGTTTGAGTGTCAAAAACCTACAAGATATAGAAAATCAACTGGAGATAAGTCTGCGAGGTGTGCGCATGAAAAAGGAACAAATTTTAACAGAAGAAATCCACAAGCTGGTAAGAAAGGTCCTCCATTTTCAGTCTGCGACAGCGGAGGTAATGGCTCTGGTCAAGTCGGTGGTTTGGGAGTCGATGAGGATAGAGCCATCGGTGCTGTACAGTTACAGGAAGGCTAA 561 0.4153 MGRGKILIKRIENTASRQVTFSKRRKGLLKKARELSILCDVEVGLIIFSSTGRLHEYASTSIKSVVERYNSSKEEHERLTNPESEIKFWQKEAEILRQQVHNLQETHRTALWFECQKPTRYRKSTGDKSARCAHEKGTNFNRRNPQAGKKGPPFSVCDSGGNGSGQVGGLGVDEDRAIGAVQLQEG 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1484 186 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Mibi10g1484 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi10g1484 186 MobiDBLite consensus disorder prediction 124 172 - -
Mibi10g1484 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi10g1484 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi10g1484 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi10g1484 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi10g1484 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi10g1484 186 Coils Coil 86 106 - -
Mibi10g1484 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 107 - -
Mibi10g1484 186 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mibi10g1484 186 MobiDBLite consensus disorder prediction 124 138 - -
Mibi10g1484 186 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Mibi10g1484 186 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1484 Mibi-ChrMibi10 35626560 35632211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1484 1 111 MADS-box Gene Family AT4G37940 67.568 8.73e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi10g1484 SRF-TF 1.9e-25 No_clan