Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1475 ATGAAGAAGGTGGATGAGATGAGGAAAGTGGTTTTCTTGCTATGGTGGTTTGGAATGACTGTGCAATTCTGTTTCTCTTACAACGAGACCTTAGTTAGACGAGAGTTGAGGGGAATGAACAGTTCAAAACCCAGAGGGCCTTCTATATCTGCAGTGAAGCTTAATACAGAAGATCATGGCCAAGTTGTGATTGAGAATGGCATTGTTCAAATCACTCTTTCTAGCCCAGAGGGGTATATTCTTGGCATCTCATATGATGGAATCGACAATGTACTAGAATCCCGTAATGAAGAACCAGACAGAGGGTATTTTGATGTTGTCTGGAATAAGCCTGGGAAGAACAGTACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTATATCATTGGACGAAAACCAAGTGGAGATTTCGTTTGTAAGAACATGGTCACCTTCCCTGGAAGGCACAAATGTGCCCATGAACATAGACCAAAGGTATATATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCAGCAATGGAGATTGATCAAATCAGGAATGTTTTCAAGCTACAGGAAGATAGGTTCGTGTATATGGCTATATCAGACACAAGGCAGAGATATATGCCAAGTATGAAAGACAGAGAAACAGGGCAACCTCTGGCTTATCCTGAAGCTGTACTCTTAACTAATCCAACTAATGAAGACTTTAGAGGAGAGGTGGATGACAAATATCAGTATTCTTGTGAGAATAAAGACAACAGAGTGCATGGTTGGATTAGCGTTGATGCTGAAGCACCCATGGGCTTTTGGGTAATTACACCCTCTAATGAGTTTCGTAATGCTGGGCCCATCAAGCAAGATCTCACCTCTCATGTCGGCCCATTTTCCCTCTCCATGTTTGTGAGCACTCACTATGCCGGAAAGGAAGTAACTATGGAATTTCAAGAAGGAGAGAGTTACAAGAAGGTTTTTGGGCCTATTTTTGTGTATCTCAACTCTGTTTCAAGCTCTGAGAATCCATTAACACTCTGGAATGATGCTAAACAACAGATGTCTAAGGAAGTCAAAAGCTGGCCTTATGATTTCCCTCAATCACAAGCTTATATTCCACCAACTCAACGTGGAAGTGTGTTTGGAAGATTATTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCAATATGCTGACTCTGCTTATATTGGTCTAGCTCTTCCTGGTGATGCAGGGTCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACCCAAGCAAACAGAAAGGGCTATTTTGTTATAAACAATGTTGTTCCTGGAGATTACAACTTGTTTGCATGGGTTCCTGGCTTTCTTGGAGATTACAGATATGATGCTACAATCACCATTACACCAGGTGGTGTGATTAAATTGGATTCACTTGTATATAATCCACCAAGAAGTGGGTCCACTGTTTGGGAAATTGGAGTCCCAGATCGCTCTGCTGCAGAATTCTACATCCCAGACCCTTACCCTACCCTCATGAACAAATTATACAATGAACAACCCAAAGACAAGTTTAGACAATATGGACTATGGGAACAATATGCAGATTTATATCCAAACAGTGATCTAGTATACACTGTTGGTGTTAGTTCATATGATCAAGATTGGTTCTATGCTCATGTTACAAGGAGCACCGGAAACAAGACATACGAGCCAACGACATGGCAGATTATATTTAATCTTCAAAATGATCCATTCAAAGGAAATTACACCCTCCAACTAGCCTTGGCAGCAGCTGCTAATTCTGACCTAAAGATTGGGATCAATGGGCAAGGTAATGGTCCTGCTCTGTTTGAAACTGGGAAATTTGGAGGAGATAGTACCATAGCTAGGCATGGAATCCATGGATTGTACTGGTTGTTCAGCATTGATGTTCCAAGCGAAGTTTTGGTGAAAGGGAATAATACCATCTATTTACGACAGGCATTTGCCATAAATCCTTTTCAAGGAGTTATGTATGACTATATACGTTTAGAAAGACCACCAACTCTAAGGACTTGA 2058 0.4116 MKKVDEMRKVVFLLWWFGMTVQFCFSYNETLVRRELRGMNSSKPRGPSISAVKLNTEDHGQVVIENGIVQITLSSPEGYILGISYDGIDNVLESRNEEPDRGYFDVVWNKPGKNSTFQRIHGTEFSVISLDENQVEISFVRTWSPSLEGTNVPMNIDQRYILRRGDSGFYSYTIFERPEGFPAMEIDQIRNVFKLQEDRFVYMAISDTRQRYMPSMKDRETGQPLAYPEAVLLTNPTNEDFRGEVDDKYQYSCENKDNRVHGWISVDAEAPMGFWVITPSNEFRNAGPIKQDLTSHVGPFSLSMFVSTHYAGKEVTMEFQEGESYKKVFGPIFVYLNSVSSSENPLTLWNDAKQQMSKEVKSWPYDFPQSQAYIPPTQRGSVFGRLLVQDWYIRGGRFQYADSAYIGLALPGDAGSWQRESKGYQFWTQANRKGYFVINNVVPGDYNLFAWVPGFLGDYRYDATITITPGGVIKLDSLVYNPPRSGSTVWEIGVPDRSAAEFYIPDPYPTLMNKLYNEQPKDKFRQYGLWEQYADLYPNSDLVYTVGVSSYDQDWFYAHVTRSTGNKTYEPTTWQIIFNLQNDPFKGNYTLQLALAAAANSDLKIGINGQGNGPALFETGKFGGDSTIARHGIHGLYWLFSIDVPSEVLVKGNNTIYLRQAFAINPFQGVMYDYIRLERPPTLRT 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1475 685 Pfam Rhamnogalacturonate lyase family 51 245 IPR010325 -
Mibi10g1475 685 SUPERFAMILY Galactose mutarotase-like 56 340 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mibi10g1475 685 CDD RGL4_M 378 478 IPR029413 -
Mibi10g1475 685 CDD RGL4_C 490 678 - -
Mibi10g1475 685 Gene3D - 54 352 IPR014718 GO:0030246
Mibi10g1475 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 681 - -
Mibi10g1475 685 SUPERFAMILY Galactose-binding domain-like 485 678 IPR008979 -
Mibi10g1475 685 FunFam Rhamnogalacturonate lyase B 375 475 - -
Mibi10g1475 685 Pfam Polysaccharide lyase family 4, domain II 402 474 IPR029413 -
Mibi10g1475 685 SUPERFAMILY Starch-binding domain-like 374 476 IPR013784 GO:0030246
Mibi10g1475 685 Gene3D - 485 678 - -
Mibi10g1475 685 Gene3D - 374 477 - -
Mibi10g1475 685 Pfam Polysaccharide lyase family 4, domain III 488 677 IPR029411 -
Mibi10g1475 685 CDD RGL4_N 55 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1475 Mibi-ChrMibi10 35519779 35524229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1475 49 680 Polysaccharide Lyase AT1G09890 55.503 0.0 727