Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1474 ATGAAAGTGGGAGAGATAAGTAAAGGAGTTTTCTTCTTGTGGTGGTTTGGAATAATTCTTCAGCTTTCCTTTTTGCATTGTGGTTGTTCTGATAACAAAATCTCAGAAAGCAGAAAAATTTTGGGGAGAAATATAAAGAGTAATCCAAAATCCAGTTCTGAAGTTAAGCTGAGCACGGAACAACATGGGAAAGTGGTGATTGAAAATGGCATTGTCCAAGTCACTCTATTAAGACCAGAGGGAAATGTTGTGGGAATATCATATAATGGAATCGACAATGTACTAGAATCTCGTAATGAGGAAACGAACAGAGGGTATTCTGATGTTGTTTGGAATAAACAAGGAATAGATACTAATTATCATCAAAGAATTGACGGGACAAATTTTACAATTGTAGCAGAAGACAAAAATCAAGTGGAGATTTCGTTTATGAGAGCATGGTCATCTTCCATGGAAGGCAAAAGTGTCCCCATCAACATAGACCAAAGGTATATATTGCGAAGAGGTAGTTCTGGATTTTACTCTTACATTATATTTGAGCGTCCAAAAGGATTCCCAGCTGTAGAATTTGAGCAAATCAGGACTGTTTACAAGCTTCAGCAAGACAGGTTCCGGTATATGGCTATATCAGACACTAGGCAAAGATACATGCCAACAATGGAAGACAGAAAAAGAGGGAAACCCCTGGCTTATCGTGAAGCTGTTCTCTTAAGCAACCCATCAAACAAAAACTTCAAAGGAGAGGTCGACGACAAATATCAGTATTGTTGTGAGAATAAAGACAACAGAGTACATGGTTGGATTAGCATGAATTCTGATTCTGATGAAGCCACGGGATTCTGGGTAATAACACCTAGCAATGAGTTTCGCAATGGTGGGCCCATCAAGCAAGATCTTACATCTCATGTTGGTCCCACTACCCTTTCTATGTTTATGAGCCTTCACTTGGGTGGAAAGGACTTGGCCATTAAATTTAGAGAAGGGGAGACATATAAGAAGGTTTTTGGTCCCGTTTTTGTGTATCTGAACTCAATTTCTAGCAATGCCAATACTCAAACTCTCTGGAGAGATGCTGTACAACAAATGCAAAAGGAAGTCCAAAGCTGGCCTTATGATTTCCCAAAATCACAAGATTACATTCCACCCACCAAACGTGGAACTGTGATCGGAAGATTACTGGTTCAAGATTGGTATATCAAAGGAGGCAGATTTCAAAGTGCTGACTCTGCTTATGTTGGTTTAGCTTTGCCTGGTGATGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACTCAAGCTAGCAAGGAGGGCTATTTCACCATAAAGAATGTCATACCAGGAAAGTATGATTTGTTTGCATGGGTTCGAGGATATATTGGTGACTATAAATATAATACAACAATCACCGTCACATCAGGTTGTAGGATCAAATTGGGTTTTATTGTATATAATCCTCCAAGAAATGGTCGTACCGTTTGGGAAATTGGAGTACCAGATCGATCAGCGGCAGAATTCTATATCCCTGATGCAAATCATAATCTCCAGAACAAATTATACAACAATCATCCCAATGAAAAGTTTAGACAATATGGATTATGGGCACGTTATGCTGAATTGTACCCAAAACAAGATCTAGTTTACACTGTCGGTGTTGATTCTCATGATAAAAATTGGTTCTTTGCTCATGTTACAAGGAAAATAGGAGAAATAAAGTATCAAGCAACTACGTGGCAGATTAGATTTGATCTTCTAAGACGCGATCTATTAAAAGGAAATTACACCCTACGACTGGCTTTAGCATCAGCCACTAATTCTAAATTGCAGGTTTGGTTCAATGAGCAAGGTAAGCGTCCCCTGTTTCAAAGTGGAATGTTAAGGGGAGACAATGCCATAGCAAGGCTTGGAATCCATGGATTGTATTGGTTGTTCAGCATTGATGTTCCAAGTGATCGTTTAGTGGAAGGCAGCAATACTATCTATATAAAGCAGCCACTTGCTATTGGTCCTTTCCAAGGGCATATGTATGACTACATACGTCTAGAGAGGCCTCCCACTCCAAGAATTTGA 2076 0.3945 MKVGEISKGVFFLWWFGIILQLSFLHCGCSDNKISESRKILGRNIKSNPKSSSEVKLSTEQHGKVVIENGIVQVTLLRPEGNVVGISYNGIDNVLESRNEETNRGYSDVVWNKQGIDTNYHQRIDGTNFTIVAEDKNQVEISFMRAWSSSMEGKSVPINIDQRYILRRGSSGFYSYIIFERPKGFPAVEFEQIRTVYKLQQDRFRYMAISDTRQRYMPTMEDRKRGKPLAYREAVLLSNPSNKNFKGEVDDKYQYCCENKDNRVHGWISMNSDSDEATGFWVITPSNEFRNGGPIKQDLTSHVGPTTLSMFMSLHLGGKDLAIKFREGETYKKVFGPVFVYLNSISSNANTQTLWRDAVQQMQKEVQSWPYDFPKSQDYIPPTKRGTVIGRLLVQDWYIKGGRFQSADSAYVGLALPGDAGSWQRESKGYQFWTQASKEGYFTIKNVIPGKYDLFAWVRGYIGDYKYNTTITVTSGCRIKLGFIVYNPPRNGRTVWEIGVPDRSAAEFYIPDANHNLQNKLYNNHPNEKFRQYGLWARYAELYPKQDLVYTVGVDSHDKNWFFAHVTRKIGEIKYQATTWQIRFDLLRRDLLKGNYTLRLALASATNSKLQVWFNEQGKRPLFQSGMLRGDNAIARLGIHGLYWLFSIDVPSDRLVEGSNTIYIKQPLAIGPFQGHMYDYIRLERPPTPRI 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1474 691 Pfam Rhamnogalacturonate lyase family 50 249 IPR010325 -
Mibi10g1474 691 FunFam Rhamnogalacturonate lyase B 381 481 - -
Mibi10g1474 691 Gene3D - 57 361 IPR014718 GO:0030246
Mibi10g1474 691 Pfam Polysaccharide lyase family 4, domain III 494 683 IPR029411 -
Mibi10g1474 691 Gene3D - 380 480 - -
Mibi10g1474 691 Gene3D - 491 683 - -
Mibi10g1474 691 CDD RGL4_N 65 344 - -
Mibi10g1474 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 687 - -
Mibi10g1474 691 SUPERFAMILY Galactose-binding domain-like 491 684 IPR008979 -
Mibi10g1474 691 CDD RGL4_C 496 684 - -
Mibi10g1474 691 Pfam Polysaccharide lyase family 4, domain II 408 480 IPR029413 -
Mibi10g1474 691 SUPERFAMILY Starch-binding domain-like 380 485 IPR013784 GO:0030246
Mibi10g1474 691 SUPERFAMILY Galactose mutarotase-like 59 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mibi10g1474 691 CDD RGL4_M 384 482 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1474 Mibi-ChrMibi10 35512552 35517214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1474 53 686 Polysaccharide Lyase AT1G09890 55.956 0.0 720