LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g1473	ATGTATAATGGGATCGTTAGCGTTACGGTGTCAAGGCCAGACGGCAATTTGATAGGAGTATCATATAATGGGATTGATAACCTTCTTGAACGTCGTAGTCGTCCTGACAATAGAGGGTATTGGGACTTTTCTTGGAACTCATTTGGTTACCGCAGTAACTATATCAGATTCAAAGGGACAACGTTTTCTGTTATAGCAGAGAACGATGATCAAGTTGAAGTTTCTTTCTCATACAAATGGAGTTCTTCCTTGCCTGCAGGAAACATCCCAATGAATATAGATATAAGGTATATTTTACGTAGAGGAAGCTCAGGATTATATTCATATGCCATATTGGAGCGTTCAGAAGATTTTCCTGCAATTCGGGTGGATGTCTTTAGGCTCGCTTACAAACTCAACCAAGACCTGTTCCATTACATGGCTATAGAAGACGACAGGCAGAGAGAAATGCCAACTGCTCAAGATAGATCCAAAGGCCAAAACCTTGATTATCCTGAGGCTGTCCTCTTAACCCATCCTACCAACCCTCAATTCTTAGGAGAGGTGGATGATAAATATATGTACTCGGTTGAGAACAAAGACAACAAAGTCAATGGATGGGTGAGCTTTAACAGCACCAATTCTTCATCAGTGGGGTTCTGGATGATTACACCCAGCAACGAATTCCGTAATGGTGGACCTACCAAGCAAAGTCTCACCTCTCATGTTGGTCCTGTCACCCTCAACTCTTTCCTTAGTCCACACTATGCTGGGAAGGGCATATCCATGATCTTCAAAGAAGGAGAGACCTATAAGAAGGTATTTGGCCCCACTTTTCTGTACCTCAACACTGTTCCAAACCCCCTTGATTCTCAAACTCTCTGGGAGGATGCTAAAAACCAGATGCAAAAGGAAGTTGAAAGCTGGCCTTATGATTTCCCTCAATCAAAAGATTTCACTCCATCCAATCAACGTGGGAAAGTGTCCGGACAATTACTAATCACATGGTTGGGTACCGGCAATACGTCATTCATCTCTGATGCTTACGTTGGTCTAGCCCTCCCAGGAGAAGAAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCTGATAACAGCGGTTTCTTCACTATACAAAATGTTGTGCCTGGGGACTACAACTTGTATGCTTGGGTCCCTGGCATTTTCGGTGATTATAAATATGAGTTTGACATCACCATCAAACCAGGAGATGACATCAAATTGGGTCAGCTATATTATAAGCCACCAAGAAATGGGCCTACGATTTGGGAAATTGGGATTCCTGATCGATCAGCCCAAGAGTTTTATGTGCCAGACCCATATCCTAACCTCATTAACAAGTTATTCTTAGGAAAGCCCAATCACAGGTTTAGACAGTACGGTCTGTGGAAACGTTATGCTGACTTATATCCAACTAATGACCTCGTTTACCACGTTGGTATTAGTGATTATTCCAAGGATTGGTTCTATGCTCAAGTTCCAAGGTAA	1500	0.4253	MYNGIVSVTVSRPDGNLIGVSYNGIDNLLERRSRPDNRGYWDFSWNSFGYRSNYIRFKGTTFSVIAENDDQVEVSFSYKWSSSLPAGNIPMNIDIRYILRRGSSGLYSYAILERSEDFPAIRVDVFRLAYKLNQDLFHYMAIEDDRQREMPTAQDRSKGQNLDYPEAVLLTHPTNPQFLGEVDDKYMYSVENKDNKVNGWVSFNSTNSSSVGFWMITPSNEFRNGGPTKQSLTSHVGPVTLNSFLSPHYAGKGISMIFKEGETYKKVFGPTFLYLNTVPNPLDSQTLWEDAKNQMQKEVESWPYDFPQSKDFTPSNQRGKVSGQLLITWLGTGNTSFISDAYVGLALPGEEGSWQTESKGYQFWTQADNSGFFTIQNVVPGDYNLYAWVPGIFGDYKYEFDITIKPGDDIKLGQLYYKPPRNGPTIWEIGIPDRSAQEFYVPDPYPNLINKLFLGKPNHRFRQYGLWKRYADLYPTNDLVYHVGISDYSKDWFYAQVPR	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g1473	499	SUPERFAMILY	Galactose mutarotase-like	6	281	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Mibi10g1473	499	SUPERFAMILY	Galactose-binding domain-like	422	498	IPR008979	-
	Mibi10g1473	499	Pfam	Polysaccharide lyase family 4, domain III	425	499	IPR029411	-
	Mibi10g1473	499	Pfam	Polysaccharide lyase family 4, domain II	340	411	IPR029413	-
	Mibi10g1473	499	CDD	RGL4_M	317	415	IPR029413	-
	Mibi10g1473	499	Gene3D	-	3	288	IPR014718	GO:0030246
	Mibi10g1473	499	Pfam	Rhamnogalacturonate lyase family	2	182	IPR010325	-
	Mibi10g1473	499	CDD	RGL4_N	3	284	-	-
	Mibi10g1473	499	Gene3D	-	313	412	-	-
	Mibi10g1473	499	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	1	499	-	-
	Mibi10g1473	499	SUPERFAMILY	Starch-binding domain-like	315	412	IPR013784	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g1473	Mibi-ChrMibi10	35503284	35509706	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g1473	1	499	Polysaccharide Lyase	AT1G09910	54.871	0.0	557