Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1439 ATGGCGAGGGAGAAGATTCAGATGAAGAAGATCAACAATGCGACTGCTAGGCAGGTGACGTTCTCGAAGAGAAGGAGAGGACTGTTCAAGAAAGCTGAGGAGCTTGCTGTTCTTTGCGATGCAGATGTTGCTGTTGTCATCTTCTCTTCTTCTGGCAAGCTCTTTCACTACTCTAGTTCCAGCCTGATGGAAATGGTAGAAAGGCGTAACTTGCACTCAAAAAACCTCGCAAAGCTGGACCAACCATCTCTCGAGTTGCAGCTAGTTGAGGACAGCAACTGCTCGAGTTTGAGCAAGGCAATTACTGAAAAGAGCCGTCAACTAAGGCGGTTGAGAGGAGAGGATCTCCAAGGTTTGGATATTGAAGAATTACAGCAGCTTGAGACGTCTCTCGAAGCTGGGTTGAACCGTGTAATTGAAGTGAAGTCACAGATGATGATGGATGAGATAGGTGATCTCGAAAGAAAGGGAATGCAGTTAATGGAAGAGAACGAGCGTTTAAGACGTCAGGTGAGAGAAATGTCTTGTGAGGAATGTTGTGACGAGGAAGGTCAATCATCTGAGTGTGTTGGTAACATTTGCAGCTACCCTGGGCATCCTCAAGACTACGATGTCACTTCAGACACGTCCCTCAGATTAGGGTGTGTTAGGGACACGAAGTCATCTAGGAAAAAGGAAGGCTAG 684 0.4664 MAREKIQMKKINNATARQVTFSKRRRGLFKKAEELAVLCDADVAVVIFSSSGKLFHYSSSSLMEMVERRNLHSKNLAKLDQPSLELQLVEDSNCSSLSKAITEKSRQLRRLRGEDLQGLDIEELQQLETSLEAGLNRVIEVKSQMMMDEIGDLERKGMQLMEENERLRRQVREMSCEECCDEEGQSSECVGNICSYPGHPQDYDVTSDTSLRLGCVRDTKSSRKKEG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1439 227 Coils Coil 150 177 - -
Mibi10g1439 227 Pfam K-box region 93 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi10g1439 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Mibi10g1439 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi10g1439 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi10g1439 227 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mibi10g1439 227 FunFam Transcription factor, MADS-box 13 83 - -
Mibi10g1439 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi10g1439 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mibi10g1439 227 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Mibi10g1439 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi10g1439 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi10g1439 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi10g1439 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi10g1439 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1439 Mibi-ChrMibi10 35159523 35163151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1439 1 214 MADS-box Gene Family AT2G22540 61.017 3.22e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi10g1439 K-box 1.5e-17 No_clan