Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1418 ATGGAAGAAGCTCTCAGAAGACTAAACGGCGATCCATTTGACTCCATTATCTCCGATCCCCCACCACCACCGCCACCATCCACAAAGAAATGCCCCTCCTCCTCCTCCGCCACCCCCACCAAGAGAACCGTCAGAGACAACGGCGGCGCCATGAGGTACCGCGGCGTCCGGCGCCGCCCTTGGGGCCGTTACGCGGCGGAGATAAGAGACCCTCAGTCCAAAGAACGACGTTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCATGTGCCTATGACTGCGCCGCACGTGCCATGCGTGGCCTCAAAGCTCGCACCAATTTCGTCTACCCTTCTTCTCCTCCTCCTTCCTCTGAACATTTCTTCCCTCCTTTCTCTCTCCCCAAACAACCCCATCACACCAAAAATCGATCTTTAGTAGTCCCTCGTAATAATAACAACAATCTGAATCCTCCTCATGTTGTCCCAGCTGATACTAGTTCCCCTCTCAATATGTTTCTCTATCGTGATTACCTTAACTCTGCTTCTTCTAATGGCCCTGTCTTGGTTGGTTCTGGTCATCCTCAGCAACATAATTTCAACAACCCCGTCAACAGTGGTGTCTCATGTTCTTTTTGTTCTGTTTCTGGTGGTTCCTCGTCTTCTACAAATGTCCCAGGTTGTTGTGTTGTGGATAATTCTGCTGGTGGTGATATGAATAATTGTAAGTTTGCTGAAGCTGATGAAGATCCTGAATTCTTTCCCAGAGAACATTCAGATTCTGGTTTGCTAGAGGAGATAGTTCATAGGTTCTTGCCAAAATCAAAGCCCAACCAGAAATCTGAGGTTCGTGTGAAGGAGGAGATCAATCTGTCTCTTTCTTCACCACAGATGATTACTCCTCAGCCAGTGTATGATCATGGCATGTTCAATTATTCCAACACTTCTCTGTGTTATGACGGTGTTAGGAACAAGGAGGTGGTGAAAGCAGAAGATTATAGTAATAATAATAATATGTCTTATGAATATCACCAAGGTTTTCCCATGCAGAAATTTGAGGGCTTTCAGAATGGGTGCACTACTGGACCAGGCTTACCTTTTAGAAGTGACCTTCACTTGAGGATGAACGATGCATCTGGCTACTCCATCATGGGAGATATCTTTCAGTACCCAGAGCTTCTTAATGAATTTGTAGCTAGGATACAAAATGCTTAA 1194 0.4698 MEEALRRLNGDPFDSIISDPPPPPPPSTKKCPSSSSATPTKRTVRDNGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPSSPPPSSEHFFPPFSLPKQPHHTKNRSLVVPRNNNNNLNPPHVVPADTSSPLNMFLYRDYLNSASSNGPVLVGSGHPQQHNFNNPVNSGVSCSFCSVSGGSSSSTNVPGCCVVDNSAGGDMNNCKFAEADEDPEFFPREHSDSGLLEEIVHRFLPKSKPNQKSEVRVKEEINLSLSSPQMITPQPVYDHGMFNYSNTSLCYDGVRNKEVVKAEDYSNNNNMSYEYHQGFPMQKFEGFQNGCTTGPGLPFRSDLHLRMNDASGYSIMGDIFQYPELLNEFVARIQNA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1418 397 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
Mibi10g1418 397 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Mibi10g1418 397 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Mibi10g1418 397 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Mibi10g1418 397 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Mibi10g1418 397 MobiDBLite consensus disorder prediction 16 30 - -
Mibi10g1418 397 MobiDBLite consensus disorder prediction 1 55 - -
Mibi10g1418 397 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 38 212 - -
Mibi10g1418 397 SUPERFAMILY DNA-binding domain 52 109 IPR016177 GO:0003677
Mibi10g1418 397 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Mibi10g1418 397 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Mibi10g1418 397 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1418 Mibi-ChrMibi10 34868092 34869285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1418 1 267 AP2-EREBP Transcription Factor Family AT1G24590 41.912 4.72e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi10g1418 AP2 3e-12 CL0081