Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1392 ATGGTACCCATTTTCAGTAGAAATCATGTAACAGTAGTGAGAGTGTGTGTGTGTGGCGATCGAGATGTTACATTTTATTGTATCGCAATTGCAAGTGTCTGTATTCACCACTGCTATCCCTTCTTCTGCTTCTCCTCCTCCTTCTTCCAGAACTTCCTTCTTCTTCTTCTCTGTGCTATGGATGAAATCTACGGTGTGCCTTTGTCGGCGGATTTCTTCGACAAGGCCTTGATGACGCCGGAGAATCTAATCTTCGCCTCTGATTACCACAGTTTTCTTCCCTCCTCCTCCTCCTCCGCCGCCACCGCCGCCGCTTTCCATGATCGCAATCAGTTGTTCGGATCAGACGACTTGCTTTCCGCCATTACCGAAGCTGAACCGCCTTCTGTTGCCCCTCAAATTCAACCTGAAGACGACGCCTCCACTTCTTCCTCCCTCATCAAAGCTAAAATCGCCTCTCATCCTCACTATCCTCGTCTCCTCCAAGCCTTCCTCGATTGCCAGAAGGTAGGAGCGCCTCCAGAAATGGCTTGTGTGTTGGACGAAATCAAGCGAGAAAATGATGTTTGTAAGCGAGAGGTTGCTTCCACGTGCTTCGGTGACGATCCCGAGCTCGACGATTTCATGGAAACGTATTGTGATCTTCTGATAAAGTATAAATCTGACCTTTCTCGGCCTTTTGACGAAGCAACCTCTTTCCTCAACGACATCCAAATCCAGCTCAGCCATCTCTCCTCTGGTGTTTCCGTTCCCACACTTTCCGATGATGGGGGCATGTCTTCAGAAGATGGTGATGCAGAAGATGCAAGTGGAATGCGTGGGGAAGATCGAGAGCTGAAAGATAGGCTTTTAAATAAGTTTGGGGGTCGGATTAGTAGTTTGAAATTGGAGTTCTCCAAGAAGAAGAAGAAGGGCAAGCTTCCCAAGGAAGCCAGGCAAACGCTTCTTGACTGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAAGGTGATAAGATAGCACTGGCAAAGTCTACGGGGTTGGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGGAAGCGACACTGGAAACCGTCGGAGAATCTGCAGTTCTCTGTCACGGATAGTCTCACCGGAGGCTTCTACTCCGATCATCCTCATATATGA 1155 0.4779 MVPIFSRNHVTVVRVCVCGDRDVTFYCIAIASVCIHHCYPFFCFSSSFFQNFLLLLLCAMDEIYGVPLSADFFDKALMTPENLIFASDYHSFLPSSSSSAATAAAFHDRNQLFGSDDLLSAITEAEPPSVAPQIQPEDDASTSSSLIKAKIASHPHYPRLLQAFLDCQKVGAPPEMACVLDEIKRENDVCKREVASTCFGDDPELDDFMETYCDLLIKYKSDLSRPFDEATSFLNDIQIQLSHLSSGVSVPTLSDDGGMSSEDGDAEDASGMRGEDRELKDRLLNKFGGRISSLKLEFSKKKKKGKLPKEARQTLLDWWNVHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENLQFSVTDSLTGGFYSDHPHI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1392 384 MobiDBLite consensus disorder prediction 252 275 - -
Mibi10g1392 384 SMART ELK_2 278 299 IPR005539 GO:0003677
Mibi10g1392 384 CDD homeodomain 310 362 IPR001356 GO:0003677
Mibi10g1392 384 ProSiteProfiles ELK domain profile. 278 298 IPR005539 GO:0003677
Mibi10g1392 384 Coils Coil 384 384 - -
Mibi10g1392 384 SUPERFAMILY Homeodomain-like 299 372 IPR009057 -
Mibi10g1392 384 Pfam Homeobox KN domain 318 357 IPR008422 GO:0003677|GO:0006355
Mibi10g1392 384 SMART HOX_1 300 365 IPR001356 GO:0003677
Mibi10g1392 384 SMART KNOX1_2 145 189 IPR005540 GO:0003677|GO:0005634
Mibi10g1392 384 SMART KNOX2_2 195 246 IPR005541 GO:0003677|GO:0005634
Mibi10g1392 384 ProSitePatterns 'Homeobox' domain signature. 336 359 IPR017970 GO:0000981|GO:0006355
Mibi10g1392 384 Pfam KNOX2 domain 199 244 IPR005541 GO:0003677|GO:0005634
Mibi10g1392 384 Pfam KNOX1 domain 147 188 IPR005540 GO:0003677|GO:0005634
Mibi10g1392 384 Gene3D - 297 368 - -
Mibi10g1392 384 ProSiteProfiles 'Homeobox' domain profile. 298 361 IPR001356 GO:0003677
Mibi10g1392 384 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 111 367 - -
Mibi10g1392 384 Pfam ELK domain 278 299 IPR005539 GO:0003677
Mibi10g1392 384 FunFam Homeobox protein knotted-1-like 2 303 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1392 Mibi-ChrMibi10 34600084 34606156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1392 60 381 Homeobox Transcription Factor Family AT1G23380 61.128 3.85e-132 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi10g1392 KNOX2 5.7e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0910 12 23406488 23412509 Mibi10g1392 10 34600084 34606156 CCT