Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1339 ATGTCCCAAAAGGCCCACAACAGAGATATTTACAGACAAACGTGGAAGGAGAATCTATTCCGTGGAAATTTCTTGAAGTTCGCTTCTCTAGGGCTTTTCCCTTTCTCGGAGAAATTCTTTGACACCTTCTTCCAGTTCATATCTCAAGGTCTGTGTGTAGTAATTTTGCTGCAGATAATGTCGCGGGTTTATGTTGGGAATTTGGACCCTCGTGTCACTGAGAGGGACCTTGAAGATGAATTTCGTATCTACGGTGTTCTTCGGAGCGTTTGGGTTGCCAGAAGGCCGCCAGGTTATGCATTTCTTGAATTTGATGATAGGAGGGATGCACTTGATGCAATTCATGCTCTCGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCCAAAGGTGGTGGAGGACGTGGTGGACGTGGACGTGGAGGTGACGACTTAAAATGTTATGAGTGTGGTGAGCCTGGTCATTTTGCTAGGGAGTGCCGCATGCGCATTGGTTCTCGAGGCTTAGGAAGTGGGCGCCGACGAAGTCCCAGTCCATATCGGCGCCGTAGAAGCCCAAGTTTTGGTCGCAGGAGCTATAGCCCTATTGGAAGAAGATCTCCTAGGCGACGTAGCATTACACCTCCTCGACGTGGACGCAGTTACAGCAGGTCCCCTCCATACCGCCGTTCTCGCCGTGACTCCCCTTATGCCAATGGACTTTAA 711 0.4923 MSQKAHNRDIYRQTWKENLFRGNFLKFASLGLFPFSEKFFDTFFQFISQGLCVVILLQIMSRVYVGNLDPRVTERDLEDEFRIYGVLRSVWVARRPPGYAFLEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRGGRGRGGDDLKCYECGEPGHFARECRMRIGSRGLGSGRRRSPSPYRRRRSPSFGRRSYSPIGRRSPRRRSITPPRRGRSYSRSPPYRRSRRDSPYANGL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1339 236 Gene3D - 136 190 - -
Mibi10g1339 236 CDD RRM_SRSF3_like 62 130 - -
Mibi10g1339 236 FunFam Serine/arginine-rich splicing factor 7 61 128 - -
Mibi10g1339 236 SUPERFAMILY RNA-binding domain, RBD 62 143 IPR035979 GO:0003676
Mibi10g1339 236 SUPERFAMILY Retrovirus zinc finger-like domains 138 165 IPR036875 GO:0003676|GO:0008270
Mibi10g1339 236 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Mibi10g1339 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 132 IPR000504 GO:0003723
Mibi10g1339 236 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Mibi10g1339 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 120 IPR000504 GO:0003723
Mibi10g1339 236 MobiDBLite consensus disorder prediction 127 146 - -
Mibi10g1339 236 MobiDBLite consensus disorder prediction 169 236 - -
Mibi10g1339 236 ProSiteProfiles Zinc finger CCHC-type profile. 148 163 IPR001878 GO:0003676|GO:0008270
Mibi10g1339 236 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 61 226 - -
Mibi10g1339 236 Gene3D - 57 132 IPR012677 -
Mibi10g1339 236 SMART rrm1_1 62 128 IPR000504 GO:0003723
Mibi10g1339 236 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 136 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1339 Mibi-ChrMibi10 33959021 33961323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1339 61 118 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 4.08e-06 45.4