Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1332 ATGTCTTGGGTTCACTCTCAAATTCTGTTGAGTAATGGTGAAATGGCTGGCCAGCCTACTCTTTCTCCATCTCCTTCTTCTCCTCCATTGCCTTATGTTTCTAACTTCCAGAAGCAAATAAGCCCATCTCCAGTTTCCTCATCTGGGAACAAAATAAGTCCAGCAGTTCTTTTCATCATAGTTGTTCTGGCTATTGTGTTCTTCATTTCGGGTCTCCTTCACTTGCTTGTTAGATTTCTGATAAAGCACAGGTCTTCTTCATCAATTTCTCAATCCAATAGATACCCAGATATGTCTGAATCAGATGCTTACCAGAGGCAGTTACAACAGCTGTTTCATCTTCATGATTCAGGACTGGATCAGGCTTTCATAGATGCTCTTCCTGTCTTCTTTTATAAGGAGATAATAGGCTTGAAGGAGCCATTTGATTGTGCCGTTTGCCTATGTGAATTCACAGATCATGACAAGCTAAGGTTGCTGCCCATGTGCAACCATGCTTTTCACATTGACTGTATAGACACATGGTTATTGTCTAATTCAACTTGTCCTCTCTGTAGAGGAGCTCTGTACACATCAGGATTTCCCTTTGAATCCCCAGTTTTTAACTTTGAAGAGACAGGAGAAGAAGATGGGGTTTCAGCTGGCACTATTGGAGGTGATCCTGCTTCTATTCACAAACATGCAGAAAACCACATTATGAGTGGAAGAAGGGTGTTCTCCGTGAGGCTTGGGAAATTTAGAAGCTCAAACACCAGACAAGGGGCAGAAAAATGTGAAGGAGAGAGCAGTGCTAGTAGTAGTAATAATTTGGATGCAAGGAGATGCTATTCAATGGGGTCTTTCCAGTATATAGTTGCTGATTCAGATTTAAGAGTAGCTTTATGTCCCAACAGGGGTGATGTGAGTAGTGGCAGTATGAGACAGTTGAAAGTGCGAGTAGCTCAAATTGGAAATAATCCTTCCTCTGATTCTGACTTTGAGGGAAAAAAACTCAACATTGCGAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTAACCCATACGGGAAATTCTACTAATGTCACTGCAAATTTGCCTTGGATGAATAGAACTAGAGACACGAGCTTTTGGTGTGAATTATGGGGGAATTACATGAAAGTGAAGAAATTGATGTGA 1197 0.411 MSWVHSQILLSNGEMAGQPTLSPSPSSPPLPYVSNFQKQISPSPVSSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFTDHDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGALYTSGFPFESPVFNFEETGEEDGVSAGTIGGDPASIHKHAENHIMSGRRVFSVRLGKFRSSNTRQGAEKCEGESSASSSNNLDARRCYSMGSFQYIVADSDLRVALCPNRGDVSSGSMRQLKVRVAQIGNNPSSDSDFEGKKLNIARKGESFSVSKIWLWSKKDKLPSSSVTHTGNSTNVTANLPWMNRTRDTSFWCELWGNYMKVKKLM 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1332 398 CDD RING-H2_PA-TM-RING 143 186 - -
Mibi10g1332 398 Pfam Ring finger domain 143 186 IPR001841 -
Mibi10g1332 398 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Mibi10g1332 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 192 IPR013083 -
Mibi10g1332 398 SUPERFAMILY RING/U-box 123 192 - -
Mibi10g1332 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 346 - -
Mibi10g1332 398 SMART ring_2 144 185 IPR001841 -
Mibi10g1332 398 FunFam RING-H2 finger protein ATL46 106 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1332 Mibi-ChrMibi10 33840320 33842666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1332 41 359 C3H Transcription Factor Family AT2G18650 39.886 1.16e-58 195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi10g1332 10 33840320 33842666 Mibi10g1332 10 33840320 33842666 ECH