Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1305 ATGATTCTTCACCGCTCCACTTTGATGTTACACCTCCATTTACCTTCAATTCCATCCCAATTCTTCAAACATTCCTTCGCTTTCCTCTCCACTTCCTCTCCTTCTCTGCTTCATGTTTCCTTCTTTTCACTTTCTCATCCTCACCGGCCTCTATTCCGGTCGTTCGGTAGTTCTGTCGTGGCGGAGGCAACAGATGCAAAAGGGAGAGACACATTCTTAGCGGAAGATAATGTTTCGTGGAATTCTATTGGTTTGTCTCATTCCATTTCCCGAGCTCTCTCTAGCATTGGTCTCTATAGGCCTTCTCTTGTCCAGGCTTCTTCTGTACCATCTGTGCTTTCTGGAAAGGATGTGGTTATTGCAGCAGAGACTGGTAGTGGTAAAACACATAGTTACCTAGTTCCTCTAATTGATAAACTACAAGGTTCCGACAACAATTCAGAAAATACTGTCCACAATAAAAGAGAGTCTCTCTGCAAGGTTCTGCTGGTTCTGTGTCCAAATGTGCAGCTCTGTGAACAAGTAGTTCAAATGGCTAACAGTATTTGTGGGGACAATGGTGCACCGATCGTTAATGTGGCAGCCATTTGCGGCAGACAGGTATTTGATGAAGCTGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAGTGATTCGTCTGATAAACTTGCTTCGCGTTGATGAAAAACTTTTATCCCAATCAAAAGAACCAGTATCAGACTTACCATTGGAGCTAGAATATGCCTTGTCATCTCTTAGTGCCGAATATGATGAACAGGAACAGCCCACTGTAGACACCATCTCAGAAGATACGAATGATGATACCTATATGGTTGACACCAATTATGAAGCTGGTTCAATCAAAAGTAAGCAGTACATTTTTGTTGCCGCCACACTTCCTGTGAATGGGAAGAAAACAGCTGGAGCAGTATTAAAACATATGTTTCCTGATGCCGAGTGGGTTAGTGGAAACTATCTTCACTGTCACCACCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGATACACAGGTGGATGAACTCATAAAAGCTGTGAGGCAAGGGTTCGGTCAAGATGTGGATAGTTTTGGGGGCATTTCTCGAACAATTGTGTTTGCCAACACTGTTGAGGCTGTTAAAGCTGTGGCAAAGGTATTGGTCCGATCTGGGATTGAATGTTTATGCTATCATAAGAATTTCACCTTGGATGAGCGAACTGAGGCCTTAGTTGAATTTCGGGAGAAAGGTGGTGTTCTTGTTTGTACTGATGCAGCTGCTCGTGGTATTGATATTCCAAACGTCTCACATGTTATCCAGGCAGATTTTGCTACTTCTGCTGTGGAATTCTTGCATCGGGTTGGCAGAACTGGCCGAGCTGGTCAATTTGGATTTGTTACTAGCATGTACACTGAATCCAACAGGGAGCTTGTTGATGCAATTCGCCAAGCAGGGGAACTTGGTCGACCTGTGGAGATAGGATTTGGCAGGAAAAGAAGTTTCCATAACAAGATAAAGAAGAGGGGTAAAGTTTAA 1536 0.4349 MILHRSTLMLHLHLPSIPSQFFKHSFAFLSTSSPSLLHVSFFSLSHPHRPLFRSFGSSVVAEATDAKGRDTFLAEDNVSWNSIGLSHSISRALSSIGLYRPSLVQASSVPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLQGSDNNSENTVHNKRESLCKVLLVLCPNVQLCEQVVQMANSICGDNGAPIVNVAAICGRQVFDEADMLLCGSFQNKVIRLINLLRVDEKLLSQSKEPVSDLPLELEYALSSLSAEYDEQEQPTVDTISEDTNDDTYMVDTNYEAGSIKSKQYIFVAATLPVNGKKTAGAVLKHMFPDAEWVSGNYLHCHHPRLEQRWVEVTVDTQVDELIKAVRQGFGQDVDSFGGISRTIVFANTVEAVKAVAKVLVRSGIECLCYHKNFTLDERTEALVEFREKGGVLVCTDAAARGIDIPNVSHVIQADFATSAVEFLHRVGRTGRAGQFGFVTSMYTESNRELVDAIRQAGELGRPVEIGFGRKRSFHNKIKKRGKV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1305 511 Pfam DEAD/DEAH box helicase 104 185 IPR011545 GO:0003676|GO:0005524
Mibi10g1305 511 Gene3D - 333 510 IPR027417 -
Mibi10g1305 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 473 IPR027417 -
Mibi10g1305 511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 317 IPR014001 -
Mibi10g1305 511 Gene3D - 69 200 IPR027417 -
Mibi10g1305 511 Pfam Helicase conserved C-terminal domain 368 461 IPR001650 -
Mibi10g1305 511 SMART helicmild6 381 461 IPR001650 -
Mibi10g1305 511 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 91 485 - -
Mibi10g1305 511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 501 IPR001650 -
Mibi10g1305 511 SMART ultradead3 97 336 IPR014001 -
Mibi10g1305 511 CDD SF2_C_DEAD 333 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1305 Mibi-ChrMibi10 33170247 33173915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1305 85 487 Eukaryotic Initiation Factors Gene Family AT5G11200 24.379 6.02e-18 84.7