Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1283 ATGAAGAGGTCTAGAGATGATGGTTATATGAGCTCTCAACTTAAACGGCCCATGGTGTCTTCCCGAGGAGAAACATCGGGGCAGCCCCAGATGATCGCTGGAGGTGCTCAGAAACTCACAACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGAAATCTTTCAAGATAAAAGGGAAAAATACGATGATTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAGGGTCACAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCTTTGGAGGATGAACAACCTGTGCAAAAGAAGCCTGTTGAATTTGATGAAGCTATAAATTTTGTCAACAAAATTAAGTCTCGCTTTCAAGGTGATGATCATGTCTACAAGTCGTTTCTAGACATACTGAACATGTACAGAAAGGAAAACAAGTCTATTTCTGAGGTTTACCAGGAGGTTGCTTCACTTTTCCATGACCATCCAGATCTTCTTGATGAGTTTACACATTTTCTTCCTGATACTTCAACAACAGCATCTACACATCATGCTCCTTCTCGGAACTCTATGCTTCGGGATAGGAGCTCTGTGGTGCCGAGGCAAATGAGTGTTGAAAAGAGAGAAAGGACTGTGGATTCTCATGGTGATCATGACCTCAGTGTTGATCGTTCTGATCCAGATCATGACAGAGTTATGATTAAGGCAGAAAAGGAGCAGAGGAGGCGTCCTGAGAAGGAAAAGGAACTCAGAGAAGAGAGGGATAGGAGAGACCGTGAGCGGGATGATAGAAATTATGGGCCTGATGGCAGCCGCTTCCCACCCAAACGGAAATCTGGTCGTAGGACAGATGACACTGGCGCTGAACCATTGCATCAAGGTGGTGATTCTGAAGAAAATTTGAGCATGCGCCCTGTGCCATCCACCATTGATGACAAAAGTTCTGTGAAGAGTATGTACAGTCAAGAGTTGGCTTTTTGTGAAAAAGTCAAGGAGAAATTACGAAATCCTGATGTTTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATAACCCGGCCAGAACTGGAATCCTTGGTGGGCGATTTACTGGGGAAATATCCAGACCTTATAGAAGGGTTTAATGATTTTTTGTCCAGATGTGAAAAGAATGATGGATTTCTTGCTGGTGTAATGAATAAAAAGTCCTTTTGGAATGAAGGGATTGCATCTAAACCAGCAAAGGTTGAGGACAAGGATAGAGATAGAGCTCGAGATCATGATAGGGACGATCGGTTTAAAGAAAGAGATCGCGAACTCCGAGAAAGGGACAAATCTTCTGCTTTTATTAGCAAGGATGTTTCAGGTCCTAAGATGTATCCATTTTCCAGCAAGGATAAGTATTATGGAAAACCTATAAATGAGCTAGACCTTTCTAATTGTGAGCAATGCACTCCGAGCTACCGTCTCCTACCAAAAAATTATCCGATACCCATGGTTAGCCAGAGAACCGAGCTTGGTGCTGAAGTAGTGAATGATCATTGGGTTTCTGTTACTTCAGGAAGTGAAGATTATTCTTTTAAACACATGCGCAAAAATCAGTACGAAGAGAGCTTATTTAGATGTGAAGATGACAGGTTTGAACTTGATATGCTGTTAGAGTCCGTGAATGTGACGACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATTGTTAAATCTGACAGCCCTATTCGTATTGAGGATCACTTGACAGCTCTAAATCGAAGGTGCATCGAACGATTATATGGTGATCATGCACTTGATGTGCTGGAGGTGTTGAGAAAGAATGCACCTCTAGCTTTACCTGTTATATTAAGCCGTTTGAAGCAGAAACAAGAAGAGTGGGCTAGGTGTCGTGCAGATTTTAATAAAGTGTGGGCTGAAATATATGCTAAGAATTATCACAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTAAGCACAAAAGCCTTACTGACCGAAATTAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCCGCTGGAAATAGACGGCCTATTATTCCGAATATGGAATTTGAGTATTCAGACCCAGATATTCATGAAGATCTGTATCAACTTATCAAATTTTCCTGTGGAGAAGTTTGTACAACTGAGCAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCAATGCTCAGTGTTCCTTCTCGACCCCAGGGTGCTGAGGATACAGAAGATGTCGTCAAGGCTAAGCTTAGTTCTGTCAAAGGTGGCAATGCAAGTCTTGGTGGCAGTCATGGTAGTCCTGGAGTAGTTTCAAATGTAATGAACTCAAGACAATTGAATACATCTGGAAATGGGGATGAATGTATTTCATTAGAACAGTCAAATTCCAAGACTGAGACTTCGGATTATAGTAAACATCATGAGGGAACACATATAAATTCATCTGTGCCTGATGAGGTATTGGCGGCCAACAAACAAGGTCATTCCATTGACCGGTTGGTGAATGCTCCCTTGGTTGCTTCCGTAATGGAACAAAGTAATGGGAGAACAAACATAGATAATGCATCGGGGCTTACCGCTACCCAATCGAGACCTGGTAATGTTGCTGCTGAGGGAGGACATTTTCCTTCTTCAGAGGTTGGTGATTCTACAAGACCAGCTACTCCTATAAATGGGGCTATTACAGAAGGCAATAAAGTTCAAAGGTACCAAGAAGAATATACTGGACACTTCAAAAGTGAAAGGGAAGAGGGTGAACTATCTCCTAATGGAGATTTTGAGGATAACTTTGCAGGATATGGGGATTCTGGTTTAACTGCAGTAGGGCATAAAGGAAAGAATGGTGGTGTGAGTGTGCAGTACCAAAATAGACGTGAAGAAGAAGGTTGTGCTGAGGCAGCAGGAGAAAATGATGCTGATGTTGATGAAGGTGAAGGAAGTCCTCATAGGTCATCACAAGACAGTGAGAATGCTTCTGAAAATTGTCATGTTTCGGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTATCAAGAAGAGCATGAGGAAGATGAGGAACATGACAACAAGGTTGAGAGTGAGGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGGTGAAGGAGATGGAATCTCATTGCCATATTCAGAACGCTTTCTGCTATCTGTAAAGCCTCTGGCAAAGCATGTTCCCCCTACGTTGCAAGAGAAAGGAAGGGTTTCTAGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGGCTTCACCGAACACTGTATGAGAGGATACAATCAGCAAAGTTGAACTCATCATCTGCAGATAGGAAGTGGAGGGCTTCAAATGATGTAAACTCCAATGATCAATATGGCAGATTTATGACAGCCCTTTATAACCTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACCCAGTCATATGTGTTATTTACATTAGACAAGTTGATATTTAAGCTTGTTAAACAGCTCCAAGCAGTTTCTACTGATGAGATGGATAATAAGCTTCTCCAACTTCATTCATATGAGAAGTCAAGAAAATCTGGAAGATTTTTTGATATAGTTTATTATGAAAATGCTCGAGTTCTTCTTCATGATGAAAACATATATCGTATTGAATGCTCATCTACACCAACACGATCATCTATCCAATTGATGGACTGTGGACATGACAAGCCTGAAGCAACTGCAGTGTCTATGGACCCTAACTTTTCAGCTTATTTGCACAATGACTTCCTTTCTGTTTTTCCTGAAAAAAAGAAGTCAGGGATTTTCTTGAAGAGGAATAAACGCAAATATACTTGTGGTGATGAACTTTCAAGTCAGGCCATGGAAGGATTACAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCAAAGGTTTCATACGTTTTAGATACAGAAGACTTTTTATTTCGAATGAGAAGGAAAAGGAAAGCTTTGCATCAAAACAGATTATGTCATGAACAGACAAATTCTTCAAACACTTGTATGAGGAGAGTACAGCAATACAGAAGATTGTTTTCCATCACGTGA 4197 0.4058 MKRSRDDGYMSSQLKRPMVSSRGETSGQPQMIAGGAQKLTTNDALAYLKAVKEIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPVQKKPVEFDEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDTSTTASTHHAPSRNSMLRDRSSVVPRQMSVEKRERTVDSHGDHDLSVDRSDPDHDRVMIKAEKEQRRRPEKEKELREERDRRDRERDDRNYGPDGSRFPPKRKSGRRTDDTGAEPLHQGGDSEENLSMRPVPSTIDDKSSVKSMYSQELAFCEKVKEKLRNPDVYQEFLKCLHIYSREIITRPELESLVGDLLGKYPDLIEGFNDFLSRCEKNDGFLAGVMNKKSFWNEGIASKPAKVEDKDRDRARDHDRDDRFKERDRELRERDKSSAFISKDVSGPKMYPFSSKDKYYGKPINELDLSNCEQCTPSYRLLPKNYPIPMVSQRTELGAEVVNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIVKSDSPIRIEDHLTALNRRCIERLYGDHALDVLEVLRKNAPLALPVILSRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLTEIKEISEKKHKEDDVLLAIAAGNRRPIIPNMEFEYSDPDIHEDLYQLIKFSCGEVCTTEQLDKVMKIWTTFLEPMLSVPSRPQGAEDTEDVVKAKLSSVKGGNASLGGSHGSPGVVSNVMNSRQLNTSGNGDECISLEQSNSKTETSDYSKHHEGTHINSSVPDEVLAANKQGHSIDRLVNAPLVASVMEQSNGRTNIDNASGLTATQSRPGNVAAEGGHFPSSEVGDSTRPATPINGAITEGNKVQRYQEEYTGHFKSEREEGELSPNGDFEDNFAGYGDSGLTAVGHKGKNGGVSVQYQNRREEEGCAEAAGENDADVDEGEGSPHRSSQDSENASENCHVSGSESADGEECYQEEHEEDEEHDNKVESEGEAEGMADANDGEGDGISLPYSERFLLSVKPLAKHVPPTLQEKGRVSRVFYGNDSFYVLFRLHRTLYERIQSAKLNSSSADRKWRASNDVNSNDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIFKLVKQLQAVSTDEMDNKLLQLHSYEKSRKSGRFFDIVYYENARVLLHDENIYRIECSSTPTRSSIQLMDCGHDKPEATAVSMDPNFSAYLHNDFLSVFPEKKKSGIFLKRNKRKYTCGDELSSQAMEGLQVINGLECKIACSSSKVSYVLDTEDFLFRMRRKRKALHQNRLCHEQTNSSNTCMRRVQQYRRLFSIT 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1283 1398 Pfam C-terminal domain of Sin3a protein 1113 1358 IPR031693 -
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 14 29 - -
Mibi10g1283 1398 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Mibi10g1283 1398 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Mibi10g1283 1398 Gene3D Paired amphipathic helix 331 404 IPR036600 GO:0006355
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 948 969 - -
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 794 853 - -
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 1042 1060 - -
Mibi10g1283 1398 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Mibi10g1283 1398 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Mibi10g1283 1398 Pfam Paired amphipathic helix repeat 355 399 IPR003822 GO:0006355
Mibi10g1283 1398 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 995 1080 - -
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 1 29 - -
Mibi10g1283 1398 FunFam Paired amphipathic helix protein SIN3 331 404 - -
Mibi10g1283 1398 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 217 309 - -
Mibi10g1283 1398 Pfam Sin3 family co-repressor 496 587 IPR013194 -
Mibi10g1283 1398 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Mibi10g1283 1398 SUPERFAMILY PAH2 domain 333 400 IPR036600 GO:0006355
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 194 214 - -
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 194 332 - -
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 836 850 - -
Mibi10g1283 1398 ProSiteProfiles PAH domain profile. 333 402 IPR003822 GO:0006355
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 1021 1036 - -
Mibi10g1283 1398 Coils Coil 253 280 - -
Mibi10g1283 1398 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Mibi10g1283 1398 Coils Coil 567 587 - -
Mibi10g1283 1398 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 794 835 - -
Mibi10g1283 1398 SMART hdac_interact2seq4b 494 594 IPR013194 -
Mibi10g1283 1398 PANTHER SIN3B-RELATED 37 1257 IPR039774 GO:0003714
Mibi10g1283 1398 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Mibi10g1283 1398 MobiDBLite consensus disorder prediction 429 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1283 Mibi-ChrMibi10 32724417 32733548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1283 28 120 WRKY Transcription Factor Family AT4G12020 60.000 6.43e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mibi10g1283 Sin3a_C 2.2e-57 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0771 12 20656298 20662921 Mibi10g1283 10 32724417 32733548 CCT
Mibi10g1283 10 32724417 32733548 Mibi10g1283 10 32724417 32733548 ECH