Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1228 ATGGAATCACTGATACAAAAATCAATAGACAATCACTACTCATGCCATGTTCGCGAGGCACTCGATGAATTGCCTGATAATTTTGTCATCACCGACCCTTCTATTTCTGGCCATCCCATTGTCTTTGCAAGCCATGGGTTTTTGAAGATGTTAGGGTATTCCAAAGAAGAAGTGATTGGCAAAAATGGGAAAATTTTTCAAGGGCCAGGGACTTGTAGAAGATCAGTGATTGAAATTCGTGAGGCTATAAGGGAAGAGAGAGGGATTCAGATTAATTTGTTGAATTATCGTAAAGATGGGAAACCCTTTTGGATTTTGTTCCACATGTGCCCTGTGTTTAATAAGTGTGATGGTAGGGTGAGTCACTTCGTGGCAGTTCAGGTTCCTTTGTCGAGGAAATTAAGGTGGTCGGGATGTGGTGTTAGGAGAAGTGATGTTAATTTGTGTGATGATGGGTCTATGGGGCAGGATTTTTTGTTTGGTTCATGTAGGAAGGAAGTTTGTTCGGATTCTTTGTTGGAACTTGGTCGTGTTCTTTCCCTTCATCAAGTTTCAGAAGTAGAACATGATGATGGTAGTAGAGAACCAGATGGTGAAGAACCGTGTGAGGCAAGTGATGTTGATAAGAGAAAAGCTATGAGTGCTATGGATAACATTTTTTCTGTGCTGACCCACTATAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGGCGTGGGTTTTCTTAGCTCATCCTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTGATCCTCATTTACCGGATATGCCTATTGTGTATGCCAGTGATGCCTTCTTGAAATTGACAGGTTACGCAAAAGAAGAAGTGCTGGGTCGGAACTGTAGATTTCTAAATGGACTGGACACTGATACCTCAGCTTTATATTTGATAAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGCGATGCCTCTGGAAAGATAGCATATTATGTGGGTGTTCAAATAGAAGAAGGCAGTGAGAGCAAGGAAGGTAGGCAGGGTCTGAGCCCTGAGAAGATTGAGCTCAGCGTAGTGGGATCAGTGAGGGTTGCTGTGAGGAGTTCATCATTGATCACTGGATCTTCCAACTCATACACAGTATAA 1221 0.4161 MESLIQKSIDNHYSCHVREALDELPDNFVITDPSISGHPIVFASHGFLKMLGYSKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERGIQINLLNYRKDGKPFWILFHMCPVFNKCDGRVSHFVAVQVPLSRKLRWSGCGVRRSDVNLCDDGSMGQDFLFGSCRKEVCSDSLLELGRVLSLHQVSEVEHDDGSREPDGEEPCEASDVDKRKAMSAMDNIFSVLTHYSELTGRLVCRKRCSISGVGFLSSSLIISLGRIKQSFVLTDPHLPDMPIVYASDAFLKLTGYAKEEVLGRNCRFLNGLDTDTSALYLIRESIKAEQPCTVRILNYRKDESPFWNFLHISPIRDASGKIAYYVGVQIEEGSESKEGRQGLSPEKIELSVVGSVRVAVRSSSLITGSSNSYTV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1228 406 Gene3D PAS domain 14 135 - -
Mibi10g1228 406 SMART pac_2 324 366 IPR001610 -
Mibi10g1228 406 SMART pac_2 90 133 IPR001610 -
Mibi10g1228 406 FunFam protein TWIN LOV 1 261 398 - -
Mibi10g1228 406 PANTHER PROTEIN TWIN LOV 1 3 393 - -
Mibi10g1228 406 Pfam PAS domain 262 360 IPR000014 -
Mibi10g1228 406 Pfam PAS domain 37 128 IPR000014 -
Mibi10g1228 406 FunFam Protein TWIN LOV 1 isoform D 27 225 - -
Mibi10g1228 406 ProSiteProfiles PAS repeat profile. 13 62 IPR000014 -
Mibi10g1228 406 SUPERFAMILY PYP-like sensor domain (PAS domain) 25 127 IPR035965 -
Mibi10g1228 406 ProSiteProfiles PAS repeat profile. 274 296 IPR000014 -
Mibi10g1228 406 SMART pas_2 249 322 IPR000014 -
Mibi10g1228 406 SMART pas_2 15 84 IPR000014 -
Mibi10g1228 406 SUPERFAMILY PYP-like sensor domain (PAS domain) 262 360 IPR035965 -
Mibi10g1228 406 CDD PAS 270 359 IPR000014 -
Mibi10g1228 406 CDD PAS 24 126 IPR000014 -
Mibi10g1228 406 Gene3D PAS domain 261 398 - -
Mibi10g1228 406 TIGRFAM sensory_box: PAS domain S-box protein 18 125 IPR000014 -
Mibi10g1228 406 TIGRFAM sensory_box: PAS domain S-box protein 274 359 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1228 Mibi-ChrMibi10 32027713 32030889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1228 14 381 AGC Kinase Gene Family AT5G58140 32.338 1.23e-60 209