Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1221 ATGGGGAAAATAAACATGATCTTTTTCTTGATATGTTGGGTAGCAATTCCTACTCTCCATGCAAATGTGTTAGAGAGTGAAACTTTTTGGAAGGGTCACTCCACCGAATTTGATCAGTATTGGCAGCAAAGAGCCCATGAAGCCGAAAAGGTCAACATGGAACAATATCTAGCTAATCCCTATGATGTCGTAGGCAACATCACCGCCAGTGTTGATAGAATGCTGCTAGCCACAGGACATGAAGGAAGGAGCTTGAAACAACGTTATAATGGTCCGTGCATGGCCACCAACCCCATCGACAGGTGCTGGAGGTGCGATCGCAACTGGGCACGACATCGCCAAAGGTTGGCTGATTGTGCACTAGGATTTGGCAGAGGCACAACCGGTGGAAAGGGTGGTAGATACTATGTGGTATCAGATCCCTCAGATCATGATCTGATTAACCCCAAACCCGGTACCCTTAGGCATGCAGTTACAAGGACCGGTCCCTTGTGGATTATCTTTAAACGAGACATGGTGATTAGGCTGCAACAGGAGCTAATTATGACTGGGGATAAGACCATTGATGGAAGAGGAGCTAGTGTTATAATCACAGGAGGAGCAGGAATTACCATCCAATTTATCAAGAATGTGATCATTCATAACATTAAGATCTTGAACATAGTGACTGCCGATGGTGGATTGATTAGAGATAGTGAAACCCACTATGGTTTGAGGACAAGGAGTGACGGTGATGGGATTTCAATCTTTGGCTCCAGCAAAATCTGGATTGATCACGTTTCCATGAGCAACTGCGCAGATGGCCTCATAGATGCCATCATGGGATCCACTGCCATCACCATCTCCAACAGCCATTTCACAAATCACAATGAGGTGATGTTGTTCGGTGCCAGCGACAGCTATTCTGGGGACAAGATTATGCAAATCACCCTTGCATTCAATCACTTTGGACGGGGATTAGTCCAAAGGATGCCAAGGGCAAGGTGGGGTTTCGTTCATGTTGTTAACAACGACTACACTCACTGGGAAATGTACGCCATTGGTGGCAGCGCCCATCCTACCATCATCAGTGAGGGTAACAGATTCATAGCCCCCAACAACTTGTTCGCCAAAGAGGTAACCAAGAGAGAATACTCACCAGTGAACATATGGATAAACTGGCAATGGAGATCAGTCAACGACTTACTCATGAACGGAGCATTCTTCATTGAATCTGGACTTGGGCTTCCAGTGTCAAGGCATGATATGTTGAAGGGAAAGCCTGGAACATACGTTGCAAGACTCACACGCTTCTGTGGAATAATCAGGTGCTACCCTGGTCACCCCTGCTAA 1332 0.4632 MGKINMIFFLICWVAIPTLHANVLESETFWKGHSTEFDQYWQQRAHEAEKVNMEQYLANPYDVVGNITASVDRMLLATGHEGRSLKQRYNGPCMATNPIDRCWRCDRNWARHRQRLADCALGFGRGTTGGKGGRYYVVSDPSDHDLINPKPGTLRHAVTRTGPLWIIFKRDMVIRLQQELIMTGDKTIDGRGASVIITGGAGITIQFIKNVIIHNIKILNIVTADGGLIRDSETHYGLRTRSDGDGISIFGSSKIWIDHVSMSNCADGLIDAIMGSTAITISNSHFTNHNEVMLFGASDSYSGDKIMQITLAFNHFGRGLVQRMPRARWGFVHVVNNDYTHWEMYAIGGSAHPTIISEGNRFIAPNNLFAKEVTKREYSPVNIWINWQWRSVNDLLMNGAFFIESGLGLPVSRHDMLKGKPGTYVARLTRFCGIIRCYPGHPC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1221 443 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Mibi10g1221 443 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Mibi10g1221 443 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Mibi10g1221 443 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Mibi10g1221 443 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Mibi10g1221 443 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Mibi10g1221 443 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Mibi10g1221 443 SMART amb_all 171 368 IPR002022 -
Mibi10g1221 443 Pfam Pectate lyase, N terminus 35 75 IPR007524 GO:0030570
Mibi10g1221 443 SUPERFAMILY Pectin lyase-like 97 434 IPR011050 -
Mibi10g1221 443 Gene3D - 96 436 IPR012334 -
Mibi10g1221 443 PANTHER PECTATE LYASE 18-RELATED 48 440 IPR045032 GO:0030570
Mibi10g1221 443 Pfam Pectate lyase 185 362 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1221 Mibi-ChrMibi10 31952899 31954907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1221 31 443 Polysaccharide Lyase AT1G14420 58.565 0.0 514