Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1206 ATGGCCCTCTTCCCAGCAAATTTCATATTACAGAACCCTCACCAAGAAGACCACCATCAACTTCCACCATCTCTCAACTCAATTCTGCCTCAGGACTATCATGGAGGGGCATCACTTCTAGGGAAGAGATCTATGACATTTTCAGGACTTGAACTTGGAGGTGAAGAAGGGAATAATGGTGAGGAAGATTTGTCTGATGATGGATCTCAAGCTGGGGAGAAGAAGAGAAGGCTGAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGCTTGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTTTGCAGCCAAGGCAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGATGGAAGACAAAGCAATTGGAAAAAGACTATGATCTTCTCAAAAGACAATATGAAGCTGTTAAAGCTGATAATGAAGCCCTTCAAGCTCAAAACCAACAACTTCAGGCAGAGATATTGACACTGAAAAGCAGAGAAGTACCGACTGAATCTATAAACCTGAATAAGGAAACAGAGGGATCATGTAGCAATAGGAGTGAGAATAGCTCAGATATTAAGTTGGATATCTCAAGAACACCTGCTATAGACAGTCCTTTATCTACTCATCATCATCAAATTACAAGCAGAACATTATTCCCACCATCAACAACATCTAATTCTGCTGTTAATAGGCCTTCTTCAGGAGTGGCTCAGCTTTTTCAAACATCATCTTCAAGACCAGAGCTTCAATGCCATAAGATTAATAATGATCATATGGTCAAAGAAGAGAGCTTGAGCAATATGTTTTGTGGGATTGATGATCAAACAGTTGGGTTCTGGCCTTGGTTGGAGCAACAACATTTCAATTGA 882 0.4138 MALFPANFILQNPHQEDHHQLPPSLNSILPQDYHGGASLLGKRSMTFSGLELGGEEGNNGEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADNEALQAQNQQLQAEILTLKSREVPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHHHQITSRTLFPPSTTSNSAVNRPSSGVAQLFQTSSSRPELQCHKINNDHMVKEESLSNMFCGIDDQTVGFWPWLEQQHFN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1206 293 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Mibi10g1206 293 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Mibi10g1206 293 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Mibi10g1206 293 Pfam Homeobox associated leucine zipper 129 169 IPR003106 GO:0006355|GO:0043565
Mibi10g1206 293 Coils Coil 121 169 - -
Mibi10g1206 293 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Mibi10g1206 293 SUPERFAMILY Homeodomain-like 65 131 IPR009057 -
Mibi10g1206 293 Gene3D - 66 135 - -
Mibi10g1206 293 MobiDBLite consensus disorder prediction 50 77 - -
Mibi10g1206 293 MobiDBLite consensus disorder prediction 175 194 - -
Mibi10g1206 293 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Mibi10g1206 293 CDD homeodomain 74 130 IPR001356 GO:0003677
Mibi10g1206 293 FunFam Homeobox-leucine zipper protein ATHB-13 66 133 - -
Mibi10g1206 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 212 IPR045224 GO:0003700
Mibi10g1206 293 SMART HOX_1 72 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1206 Mibi-ChrMibi10 31675144 31676360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1206 1 293 Homeobox Transcription Factor Family AT1G69780 60.855 2.39e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi10g1206 Homeodomain 1.5e-15 CL0123