Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1173 ATGTTGAAGATTCGAGATCAAGCTTTCATGGAGGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTACCCATGTGGGAAGTCTCTGGGTGGACACATCAGAACTCATATGATTAATAATGAACATTCACCATCACATCAATCCAAGGAAGTTAATAAGGCCAATAATGCTGATGACAGTGTCGCCAAGTTCTATGGTGGAATGAAGAGGAAGAGAGATTTTGGGTCTGAAGAGGAAGCTGCTTCTGAAAACCCCATTTATGGTCTGAGAGAGGAGGAGAATTCCAAGAAGACAATGAAGAAGAAGAAGAAGAAGCTTGTGATTCCCAAAGCTTCTTCTTCTTCTATTATACAAAAAGAAAGATTCTGCAAAGAATGTGGGAAAGGGTTTTTGTCTCTGAAAGCTCTCTGTGGCCACATGGCTTGTCACTCTGAGAAAGACAAAGGGAATTCTGGGTTTAGCATGAAGCAGAAAATGGTGATGATGACGATGGATAGCCAATCTGACACAGAGACTTCTACTGTTCCTCAGAATTATCCTAGGAGATCCAGAAGGATGAGGTTCAAGACAGTGAATATTACTGATACAAATTATGATCTAGCTTCCTCTGTTCCTTTGATGAATGGTTCTTCCTCTGCTTCTGATGTGGAGCAAGAACAAGAAGAGGTTGCTAAGTGTTTGATGTTATTGTCCAAAGATTCCAGCCATAGGGGTCGTTTTGTTTTGCCTGCTGAATCTTCAGACAACAATTCTGTTGTGGTAGAGGTAAAATCAGAGTCTTTGGAGACGCGCATAAATTTCAAAAATGGTGACAGAAGCTTTATGTCTAATGGTATTAAGATCGTGGAAGAGGTGGAGAAGAAGAAGGCAGTGATGTTTGATAAGAACATGAAGTTGAAGTCTGCTGAGATTGTTGATTCTGATCATTCAGATTCTGGGTATTTCAGAAATGGTCCCAAAAAGTTGGATTTGGATGTTCAAAGTGACAAGCATCACGGGAATAGGGAACCCAAAACGCCTAAAGTGGAAGACATGTCTGGGTTTGAGTTTGATAGGAACTATGAGATGCTGATCAAGAACAGAGAAAGAACCAGATTCACTGAACCCAGAAAACTAATTTTGGAGGAGGATTTGGACTATGATACTACAAAAGATGGGTTGACAAGGGAAGAAGAGTTCATCAATTGGAGAAAGAGATCAAGCAATTCAATTGGTGTTTCTTGCAAAAAGATACCAAATGGTTTCCACAGTGAAAAAATTATCAGTGGATCTTATGATTCATCAGCATATGATGAGAGTGATGAAAGTAGCACAGACACTGATGCTTATCCTGCTCTGATATCTCACACCAGCAAGGTCATCAATGGAAAGAAGATGAGCAACATCTGGGCTTTTGCTGAAAATGTCTGGAAATCTGAGAATGCTCTTGTTATTATCCCATATGATGGAAGCTAG 1458 0.4019 MLKIRDQAFMEERKFVCKYCNKKYPCGKSLGGHIRTHMINNEHSPSHQSKEVNKANNADDSVAKFYGGMKRKRDFGSEEEAASENPIYGLREEENSKKTMKKKKKKLVIPKASSSSIIQKERFCKECGKGFLSLKALCGHMACHSEKDKGNSGFSMKQKMVMMTMDSQSDTETSTVPQNYPRRSRRMRFKTVNITDTNYDLASSVPLMNGSSSASDVEQEQEEVAKCLMLLSKDSSHRGRFVLPAESSDNNSVVVEVKSESLETRINFKNGDRSFMSNGIKIVEEVEKKKAVMFDKNMKLKSAEIVDSDHSDSGYFRNGPKKLDLDVQSDKHHGNREPKTPKVEDMSGFEFDRNYEMLIKNRERTRFTEPRKLILEEDLDYDTTKDGLTREEEFINWRKRSSNSIGVSCKKIPNGFHSEKIISGSYDSSAYDESDESSTDTDAYPALISHTSKVINGKKMSNIWAFAENVWKSENALVIIPYDGS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1173 485 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Mibi10g1173 485 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Mibi10g1173 485 MobiDBLite consensus disorder prediction 74 99 - -
Mibi10g1173 485 Pfam C2H2-type zinc finger 15 38 - -
Mibi10g1173 485 Pfam C2H2-type zinc finger 124 146 - -
Mibi10g1173 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Mibi10g1173 485 SUPERFAMILY beta-beta-alpha zinc fingers 13 144 IPR036236 -
Mibi10g1173 485 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 10 439 - -
Mibi10g1173 485 SMART c2h2final6 122 144 IPR013087 -
Mibi10g1173 485 SMART c2h2final6 15 37 IPR013087 -
Mibi10g1173 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 42 IPR013087 -
Mibi10g1173 485 MobiDBLite consensus disorder prediction 309 345 - -
Mibi10g1173 485 MobiDBLite consensus disorder prediction 74 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1173 Mibi-ChrMibi10 31246246 31248012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1173 10 330 C2H2 Transcription Factor Family AT1G26610 42.073 2.30e-60 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi10g1173 zf-C2H2_6 5.1e-05 CL0361