Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1148 ATGGATCAATCAATGGCTTCTGAATCCCATGTTTCTGAGAATCCATCTCTCTCTGAAGGCTTATTCAGATTCAGAGACCTCTCTGTTTTCTTACCCTTCATCTTAGGCTTCTCCACCGATTCTTCTTCCAGTCAAGACCCAAATCAGGAAACCACAAGTTCAGTAAATGGGGAAAGAGAAAGAGTCATCTTGATCAACCCCTTTACGCAAAACATGGTGGTGATTGGTGGTAATAATTCGAGCCTTGAAACTCTGTTCCAAGAAATTGGTTTGAAAAATGGGCAGCCTCCAGCGTCGAAGGAATCTATAGATGCGATGCCAATGGTGGAGATTGGAGAAGAAGAAGGTGGTGGCGAGTGTGTGATATGTTTGGAGGAATGGGAGGTTGGTGGGGTGGCGAAAGAGATGCCATGTAAACACAAGTTTCATCAGAATTGTATAGAGAAGTGGTTGGGAATTCATGGGTCTTGCCCTGTTTGTAGATATCAGATGCCTGTGGGTGAGAGAGAAGTGGGCAAGAGAGATGAAGATGAAGAACAAGAAGGAGGAGAGAGGAGGAGGGTTGGCAGGGAAATTTTGGTGAGTTTCTCTTTTAGGAGTGAGAATTCAAACCAAGGTCCTTCTGATAATTCCAGTGATCCTTCAGTTCAAGAGGTGATTCTGAGGTAG 669 0.4439 MDQSMASESHVSENPSLSEGLFRFRDLSVFLPFILGFSTDSSSSQDPNQETTSSVNGERERVILINPFTQNMVVIGGNNSSLETLFQEIGLKNGQPPASKESIDAMPMVEIGEEEGGGECVICLEEWEVGGVAKEMPCKHKFHQNCIEKWLGIHGSCPVCRYQMPVGEREVGKRDEDEEQEGGERRRVGREILVSFSFRSENSNQGPSDNSSDPSVQEVILR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1148 222 FunFam E3 ubiquitin-protein ligase RNF181 86 167 - -
Mibi10g1148 222 MobiDBLite consensus disorder prediction 168 222 - -
Mibi10g1148 222 Pfam Ring finger domain 119 161 IPR001841 -
Mibi10g1148 222 SUPERFAMILY RING/U-box 114 165 - -
Mibi10g1148 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 46 165 - -
Mibi10g1148 222 SMART ring_2 120 160 IPR001841 -
Mibi10g1148 222 MobiDBLite consensus disorder prediction 196 222 - -
Mibi10g1148 222 MobiDBLite consensus disorder prediction 168 192 - -
Mibi10g1148 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 167 IPR013083 -
Mibi10g1148 222 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1148 Mibi-ChrMibi10 30724416 30725084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1148 5 198 C3H Transcription Factor Family AT1G26800 51.500 7.66e-59 182