LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g1142	ATGGGCAGGGTGAAGCTAAAGATAAAGAGGCTGGAGAACACTAATGGTCGGCAGGCCACCTATGCTAAAAGGAGGAATGGAATTATGAAAAAGGCTTCGGAATTATCTATACTGTGTGATATAGATATTATACTTCTCATGTTCTCACCGTCTGGGAAGCCAGCACTATGCAGGGGGAGGCGCAGTAACATAGAGGAGGCACTGAAGAAAACATTTAAGAAGTTAGACCATGATGTAAATGTGCAAGAATTTCTGGGTACAAGTCATTGGGCTGAACTTGATAAAATCAACAGTGTGGGGCAATTGGAACAGATGGAAAAATCTCTCAGGGAGTCTATCAATCAACTTCGATTGCGTAAGGAGAATATTCAAAAGCAACAACTTGAATCATTGCAATGCAGTAACCAGTTCAGTGAGATTCCCTTCAGGATGAGTGCTGATCAACATCTCCAATCTCTATCATGGATTGGCAATAATGACAGCCAACATATGGTTTTACCTGATGATGCAAACTTGCTTCTCCCCAAAGATATAGATTGCTCTGCAAGCTCCTCTTTCGGGAGTTATGCTAGTTACCTTGGCTCAAGTCCAAAACCAGACCTTCCTAATCCTGGGCAAGAAAACGGTGTCCTCAATGACATGACAAGTACTGCTTCTATGAGACTACCATTAGGCGGGCAATTTCCGTACCTGCCATATAATTTCAATCTTTACAATGATATCAAGTTCCAGACATCTGCAGAGGTCAACCCTCATGAAAATTCCGTAGATTATTGTCCTAATCAAAGCTTTGAAGCTCCTACACTTGCTTTTGACTCTAACCACCATGGATGGGCATCCACATCAGGGCCTTGTGCTGTGACCACCATGTTGGATGAATTTTTGTATGCCCAGGCAAGTTTCCCTCAAGTAACTTTGGCTTCTAATAACAGCACCCCTTTCCCTTTTTTTTGTTCTCTGGTATTTTATCCATGGATTTAG	981	0.422	MGRVKLKIKRLENTNGRQATYAKRRNGIMKKASELSILCDIDIILLMFSPSGKPALCRGRRSNIEEALKKTFKKLDHDVNVQEFLGTSHWAELDKINSVGQLEQMEKSLRESINQLRLRKENIQKQQLESLQCSNQFSEIPFRMSADQHLQSLSWIGNNDSQHMVLPDDANLLLPKDIDCSASSSFGSYASYLGSSPKPDLPNPGQENGVLNDMTSTASMRLPLGGQFPYLPYNFNLYNDIKFQTSAEVNPHENSVDYCPNQSFEAPTLAFDSNHHGWASTSGPCAVTTMLDEFLYAQASFPQVTLASNNSTPFPFFCSLVFYPWI	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g1142	326	SUPERFAMILY	SRF-like	1	70	IPR036879	GO:0003677\|GO:0046983
	Mibi10g1142	326	ProSiteProfiles	MADS-box domain profile.	1	53	IPR002100	GO:0003677\|GO:0046983
	Mibi10g1142	326	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	54	IPR002100	GO:0003677\|GO:0046983
	Mibi10g1142	326	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mibi10g1142	326	Coils	Coil	99	126	-	-
	Mibi10g1142	326	CDD	MADS	2	54	-	-
	Mibi10g1142	326	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mibi10g1142	326	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mibi10g1142	326	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mibi10g1142	326	Gene3D	-	14	91	IPR036879	GO:0003677\|GO:0046983
	Mibi10g1142	326	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g1142	Mibi-ChrMibi10	30658091	30665056	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g1142	1	302	Type I MADS-box Gene Family	AT2G03060	38.243	1.24e-69	220

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Mibi10g1142		SRF-TF	5.2e-19	No_clan