Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1026 ATGCCCAGCTCGAGGCAATCTTTCTGCATCTCTTCTTCTTCTTCTTCTTCTCTGTTTTGTATCCTTCTCTTTCACTCCATTTTTCTCCATGGTTTAGCATTTTCTGCAAATCATGAAGCATCTATTCTCTTCTCTTGGCTTCATAGCTCTGCTTCACCACCACCTCCATCTTTCTCTAATTGGAACATCCTTGACTCCAACCCATGCAATTGGACCTTCTTAACATGTTCCCCACAAGGAGTTGTCACTGAAATTAATATACAATCCATTCCTTTGGAGCTTCCTTTGCCTTCCAATCTCTCTTCCTTTCCCCATCTTCAAAAACTTGTCATTTCTGATGCCAATCTTACTGGAGCCATCCCTGATGATATTGGTGACTGCTCTGCCCTCACTGTCATTGACCTCAACTCCAACAATCTCGTAGGGTCCATCCCTGCAAGTATAGGTAAGCTTCAAAACTTGGAGAGTTTGTCTCTGAACACAAACCAGCTTACAGGAAAAATCCCAGTTGAGCTAGGAAGCTGCATTGGCCTTAAAAGTATCCTCCTTTTTGATAACCAGCTAAGTGGTGTTATCCCACCTGAGATAGGGAAGTTGTCAAAACTTGAGATTCTTAGAGCAGGAGGGAACAAAGATTTAGTAGGGAAAATTCCTGAAGAGATTGGAGAATGCAGCAATTTGACTGATTTGGGCCTGGCTGATACTGGTTTATCAGGCTCATTGCCAGCTTCTTTGGGAAAACTGAGTAAGCTTCAGACTTTGTCCATTTACACTACAATGCTATCTGGTGAGATTCCAGCAGAGCTAGGTAACTGCACTGAACTTGTTGATTTATTCCTATACGAGAATAGTTTATCAGGGTCTATTCCACCTGAGCTGGGTAAGCTTCAAAAGCTGGAGCAATTGTTTTTATGGCAGAATGGTCTTGTGGGAGCAATCCCAGAAGAGATTGGAAACTGTACTAGCTTGAAAAGAATTGATCTCTCTTTGAATTCCCTATCTGGTACTATCCCTTTATCTTTTGGGGGCCTGTTAGAACTTGAGGAGTTTATGATAAGTGATAATAATGTGTCTGGTTCAATACCTCCAAGTCTTTCAAATGCCTCTTTTCTGCAACAGCTGCAAGTTGACACAAATCAGCTCTCAGGTTTGATCCCCCCAGAGCTTGGGAAGTTATCAAAGCTCACAGTTTTCTTTGCTTGGCAGAACCAACTTGAAGGAAGTATTCCTTCCACTCTGGCAAATTGTAGTAACCTACAAGCACTGGATTTGTCTCACAATGAACTTACTGGTAGCATTCCTCCTGGCCTGTTTCAACTTCAAAACCTTTCAAAACTGCTCTTGATTTCTAATGATATTTCTGGTTCAATCCCATCAGAAATAGGCAGTTGTAGTTCTCTTATAAGAATGAGGCTTGGGAAGAATAGGATTGCTGGTGGGATTCCTAAGTCAATAGGGAGCCTCAAAAACCTGAACTTTCTAGACCTCAATGAGAATCACCTTTCTGGGCAAGTCCCAGATGAGATTGGCAACTGCACAGAACTGCAAATGATAGACTTCAGCAGCAACAATTTGGAAGGTCCATTGCCTAATTCTTTGTCATCACTATCTATGATCCAAGTATTCGATGGATCTTCGAACAGATTTTCAGGTCCCATACCACAAACTTTGGGCCGTCTTGTTTCCCTAAATAAGCTAATCCTGGGTAGAAACTTGTTTTCCGGACCGATTCCGGCATCATTGAGCCAATGTTCAAGTCTCCAAATGCTTGATCTTAGTGGCAATGAGCTCACAGGAAGCATTCCAGCAGAGCTGGGTCATATAGAGACTCTTGAAATTGCTCTTAACCTTAGTTTCAATTCCCTAAGTGGCCCAATACCAGATCAGATCTCTGCTCTTACCAAGCTTTCTATACTAGACCTTTCTCATAACCAGTTAGAGGGAGGTTTAAACTCACTTGCAGGGCTAGATAATCTTGTCTCTCTTAATATTTCCTTCAACAATTTCACAGGTTATCTACCAGATAATAAACTTTTCAGGCAATTATCTCCAAAGGACCTAACTGGGAATCAAGGGCTTTGCTCATCTGGTCAAGACTCATGCTTTGTGAGTGCTTCAAGCATGACTATAAGTGGAAGTGAGGCGAGGAAGTCGGGAAGGATTAAGCTAGCCATTGGTTTGCTAGCAGTCTTAACAGTACTACTGACAATAATGGGGATCATTGCGGTGATAAAGGCACGGAGAACCATGAGAGATGATGATTCAGAACTAGGTGACTCATGGCCATGGCAATTCATTCCATTCCAGAAGCTAAACTTTTCAGTGGAGCAGGTGTTGAGGCGTTTAGTTGAAGGAAACATAATTGGAAAAGGATGTTCTGGTGTTGTTTATCGTGCTGAAATGGACGATGGTGAAGTGGTAGCTGTGAAGAAACTGTGGCCTACAACAATGGATGCAGGAGACCATGGATTCAAGGATGATAAAAGTGGAATTCGTGACTCATTCTCAACTGAGGTGAAAACACTTGGATCAATCCGTCATAAGAACATTGTTAGATTCTTGGGATGTTGTTGGAATAAGAACACAAGATTGCTGATATATGATTATATGGCAAATGGAAGTCTTAGTAGTTTACTTCATGAGAAGACAGGGAATTGTCTGGAATGGGAACTCAGGTACAGAATTCTGTTGGGAGCTGCAGAAGGGCTTGCATATTTGCACCATGATTGTGTGCCTCCCATAGTACATAGAGACATCAAAGCCAATAACATCCTCATTGGCATTGAGTTTGAGTCTTATATTGCAGACTTTGGCTTGGCTAAGCTGGTTGATGATGGTGGCTTTGGTCGTTCTTCCAACACAGTTGCTGGTTCTTACGGATACATTGCTCCAGAATATGGCTACATGATGAAAATCACAGAGAAGAGCGATGTTTATAGCTATGGTGTGGTTATGTTGGAAGTCTTGACAGGCAAGCAACCGATAGATCCAACTATACCAGAGGGACAGCATGTGGTTGATTGGGTGAGACAGAAAAGAGGGGTTGAAGTGCTTGATCTTAGCTTACTGTCAAGACCAGAATCAGAAATAGATGAAATGATGCAGGCACTAGGCATAGCCTTATTGTGTGTAAACTCATCTCCTGATGAAAGGCCAACAATGAAAGATGTTTCAGCAATGCTCAAAGAGATCAAACAAGAAAGAGAAGAATATGCAAAAGTTGATGCACTTTTAAAGGGATCTCCTGCAAATTATGTCAAAGCAACATCTTCATCATTTCCAGCAGTGCAGAATTTGTTCCGGGAAGGCGATGATAATAATACTATCTTCTCTGTATCTTCACTGCTTCATTCATCCTCTTCCAAAGGGGGTTTGAAGTGA 3381 0.4188 MPSSRQSFCISSSSSSSLFCILLFHSIFLHGLAFSANHEASILFSWLHSSASPPPPSFSNWNILDSNPCNWTFLTCSPQGVVTEINIQSIPLELPLPSNLSSFPHLQKLVISDANLTGAIPDDIGDCSALTVIDLNSNNLVGSIPASIGKLQNLESLSLNTNQLTGKIPVELGSCIGLKSILLFDNQLSGVIPPEIGKLSKLEILRAGGNKDLVGKIPEEIGECSNLTDLGLADTGLSGSLPASLGKLSKLQTLSIYTTMLSGEIPAELGNCTELVDLFLYENSLSGSIPPELGKLQKLEQLFLWQNGLVGAIPEEIGNCTSLKRIDLSLNSLSGTIPLSFGGLLELEEFMISDNNVSGSIPPSLSNASFLQQLQVDTNQLSGLIPPELGKLSKLTVFFAWQNQLEGSIPSTLANCSNLQALDLSHNELTGSIPPGLFQLQNLSKLLLISNDISGSIPSEIGSCSSLIRMRLGKNRIAGGIPKSIGSLKNLNFLDLNENHLSGQVPDEIGNCTELQMIDFSSNNLEGPLPNSLSSLSMIQVFDGSSNRFSGPIPQTLGRLVSLNKLILGRNLFSGPIPASLSQCSSLQMLDLSGNELTGSIPAELGHIETLEIALNLSFNSLSGPIPDQISALTKLSILDLSHNQLEGGLNSLAGLDNLVSLNISFNNFTGYLPDNKLFRQLSPKDLTGNQGLCSSGQDSCFVSASSMTISGSEARKSGRIKLAIGLLAVLTVLLTIMGIIAVIKARRTMRDDDSELGDSWPWQFIPFQKLNFSVEQVLRRLVEGNIIGKGCSGVVYRAEMDDGEVVAVKKLWPTTMDAGDHGFKDDKSGIRDSFSTEVKTLGSIRHKNIVRFLGCCWNKNTRLLIYDYMANGSLSSLLHEKTGNCLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGIEFESYIADFGLAKLVDDGGFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVMLEVLTGKQPIDPTIPEGQHVVDWVRQKRGVEVLDLSLLSRPESEIDEMMQALGIALLCVNSSPDERPTMKDVSAMLKEIKQEREEYAKVDALLKGSPANYVKATSSSFPAVQNLFREGDDNNTIFSVSSLLHSSSSKGGLK 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1026 1126 SMART LRR_sd22_2 512 538 - -
Mibi10g1026 1126 SMART LRR_sd22_2 416 445 - -
Mibi10g1026 1126 SMART LRR_sd22_2 296 319 - -
Mibi10g1026 1126 SMART LRR_sd22_2 633 658 - -
Mibi10g1026 1126 SMART LRR_sd22_2 151 172 - -
Mibi10g1026 1126 Coils Coil 1125 1126 - -
Mibi10g1026 1126 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 435 529 - -
Mibi10g1026 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 914 926 IPR008271 GO:0004672|GO:0006468
Mibi10g1026 1126 SMART LRR_typ_2 633 655 IPR003591 -
Mibi10g1026 1126 SMART LRR_typ_2 151 175 IPR003591 -
Mibi10g1026 1126 SMART LRR_typ_2 560 584 IPR003591 -
Mibi10g1026 1126 SMART LRR_typ_2 488 512 IPR003591 -
Mibi10g1026 1126 SMART LRR_typ_2 296 320 IPR003591 -
Mibi10g1026 1126 SMART LRR_typ_2 656 681 IPR003591 -
Mibi10g1026 1126 SMART LRR_typ_2 416 440 IPR003591 -
Mibi10g1026 1126 SMART LRR_typ_2 585 608 IPR003591 -
Mibi10g1026 1126 FunFam LRR receptor-like serine/threonine-protein kinase 534 609 - -
Mibi10g1026 1126 SUPERFAMILY L domain-like 46 405 - -
Mibi10g1026 1126 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 371 1056 - -
Mibi10g1026 1126 Pfam Leucine rich repeat N-terminal domain 37 77 IPR013210 -
Mibi10g1026 1126 SMART serkin_6 782 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g1026 1126 Coils Coil 1054 1074 - -
Mibi10g1026 1126 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 765 869 - -
Mibi10g1026 1126 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Mibi10g1026 1126 PRINTS Leucine-rich repeat signature 419 432 - -
Mibi10g1026 1126 PRINTS Leucine-rich repeat signature 633 646 - -
Mibi10g1026 1126 FunFam Nuclear pore complex protein NUP107 36 193 - -
Mibi10g1026 1126 Pfam Protein tyrosine and serine/threonine kinase 785 1060 IPR001245 GO:0004672|GO:0006468
Mibi10g1026 1126 Pfam Leucine Rich Repeat 418 437 IPR001611 GO:0005515
Mibi10g1026 1126 Pfam Leucine rich repeat 104 164 IPR001611 GO:0005515
Mibi10g1026 1126 Gene3D Transferase(Phosphotransferase) domain 1 870 1081 - -
Mibi10g1026 1126 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Mibi10g1026 1126 Gene3D Phosphorylase Kinase; domain 1 768 869 - -
Mibi10g1026 1126 SUPERFAMILY L domain-like 385 701 - -
Mibi10g1026 1126 Gene3D Ribonuclease Inhibitor 35 210 IPR032675 -
Mibi10g1026 1126 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 211 434 - -
Mibi10g1026 1126 SUPERFAMILY Protein kinase-like (PK-like) 759 1061 IPR011009 -
Mibi10g1026 1126 ProSiteProfiles Protein kinase domain profile. 782 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g1026 1126 Gene3D Ribonuclease Inhibitor 211 446 IPR032675 -
Mibi10g1026 1126 Gene3D Ribonuclease Inhibitor 447 704 IPR032675 -
Mibi10g1026 1126 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 870 1079 - -
Mibi10g1026 1126 FunFam Putative LRR receptor-like serine/threonine-protein kinase 614 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1026 Mibi-ChrMibi10 28843668 28847659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1026 33 1080 Receptor kinase-like Gene Family AT5G56040 49.483 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mibi10g1026 PK_Tyr_Ser-Thr 6.2e-43 CL0016