Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1022 ATGGGAAAGAAAGTTTTAATATATATATTTAATATGGGAAGAGGTAGGGTTCAGCTTAAGAGGATAGAGAACAAGATCAATCGGCAAGTGACTTTCTCCAAAAGGAGAAATGGATTGTTTAAGAAAGCTCATGAGATCTCTGTCCTCTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACAGATTCTTGCATGGAGAAAATACTGGAACGCCATGAAAGGTATGCTTATGCAGAGAGACAGCTAGCTGGAGGAAATGATTCCGAGTCACAGGAAAACTGGACGATTGAATACTCTAGACTGAAAGCTAAGATTGAGCTGTTACAGAGAAACCATAGGCACTATATGGGAGAAGATCTGGCTTCCATGAGCCTCAAGGAGCTCCATAGTCTGGAGCAGCAGCTTGATACTTCCATCAAGCAAATTCGCACTCGCAAAAACCAGCTCATGTACGAGTCCATTGCTGAGCTTCAGAAAAAGGAGAAAGTGATACAGGAACAGAATAGCATGCTGGCGAAGAAGATAAAGGAGAGAGAGAAGGCGGCGGCACAGCATAGCCATATGACATGGGAGCAGCAAAATCTTGGAGGAGCTAATTCATCTTACCTACTCCAACCTCCACTTCCCACTCTTCATATTGGAGGGAATTACAGAGAGGAAGGAGCAGAAAGGAACGAGCTAGACCTAACCCTGGAACCACTCTATTCCTGCAACCTCGGATGTTTTTAA 756 0.4392 MGKKVLIYIFNMGRGRVQLKRIENKINRQVTFSKRRNGLFKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLAGGNDSESQENWTIEYSRLKAKIELLQRNHRHYMGEDLASMSLKELHSLEQQLDTSIKQIRTRKNQLMYESIAELQKKEKVIQEQNSMLAKKIKEREKAAAQHSHMTWEQQNLGGANSSYLLQPPLPTLHIGGNYREEGAERNELDLTLEPLYSCNLGCF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1022 251 Coils Coil 163 183 - -
Mibi10g1022 251 ProSiteProfiles K-box domain profile. 100 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi10g1022 251 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Mibi10g1022 251 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Mibi10g1022 251 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Mibi10g1022 251 Gene3D - 24 96 IPR036879 GO:0003677|GO:0046983
Mibi10g1022 251 FunFam Floral homeotic protein APETALA 1 24 79 - -
Mibi10g1022 251 SUPERFAMILY SRF-like 13 91 IPR036879 GO:0003677|GO:0046983
Mibi10g1022 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 182 - -
Mibi10g1022 251 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Mibi10g1022 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Mibi10g1022 251 CDD MADS_MEF2_like 13 90 IPR033896 GO:0000977|GO:0045944
Mibi10g1022 251 ProSitePatterns MADS-box domain signature. 14 68 IPR002100 GO:0003677|GO:0046983
Mibi10g1022 251 Pfam K-box region 96 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi10g1022 251 Coils Coil 100 127 - -
Mibi10g1022 251 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1022 Mibi-ChrMibi10 28797041 28803297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1022 12 251 MADS-box Gene Family AT1G26310 61.024 2.61e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi10g1022 K-box 1.7e-31 No_clan