Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0927 ATGCATGCAAGCAGTTGCATAGATGAAAGCACCACCAGCGATTCCATCTCCATCTCCATTTCCCTGTTCGCAGTATTACCTTCAACCGGAACTCCTAAGAACTCATCGCCGCCGCCCAACATGGTCGCCGCCGAGGCCGAGTCCCGGAAACTGCCATCATCAAAATACAAAGGCGTTGTCCCTCAGCCCAATGGCCGATGGGGAGCCCAGATTTACGAGAAGCACCACCGTGTCTGGCTCGGAACCTTCGACGAAGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCCCAGAGATTCCGCGGCAAAGACGCCTTCACCAATCTCAACTCCGGCGACGTGGAATCGGAGTTTCTGGAGTCGCATTCGAAATCTGAGATCGTGGACATGCTGAGGAAGCATACGTACAATGATGAGCTTGAACAGAGCAAGCGAAACAGAGGAGGCAACTGGGGGTTGAAGAAGGAGGAGGAGGATGGCGCGTGGCTTGGACGAGCTCAGAAGGCGCGTGAAAAGCTCTTTGAGAAAAACGTTACGCCCAGTGACGTGGGGAAGCTGAATCGGTTGGTTATACCAAAGCTGCACGCGGAGAAGCACTTCCCATTGCAGAACAACAACAATGAAGGCATTTCTTCATCTTCTGCACCGAAGGGGTTGCTTTTGAACTTCGAGGATGATGGTGGGAAGGTTTGGAGGTTTCGGTATTCGTATTGGAATAGTAGTCAGTGTTATGTGTTGACCAAAGGGTGGAGTAGGTTTGTGAAGGAGAAGAATCTGAAAGCCGGCGATACGGTTAGTTTTTGCCGGTCCACCGGGTCGGACCGCCAGCTCTACATTGACTGGAAGTCCAGGGGGATGTTTAATCCGGTCGGACCGGTGGTCCAGCCGGTTCGGCTATTTGGGGTGAACATTTTGAAAATGCCGTTCCCGGCGAAGAGGAAAGAGATGGAGCTGTTAAGAGTTTAG 966 0.528 MHASSCIDESTTSDSISISISLFAVLPSTGTPKNSSPPPNMVAAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHHRVWLGTFDEEDEAARAYDIAAQRFRGKDAFTNLNSGDVESEFLESHSKSEIVDMLRKHTYNDELEQSKRNRGGNWGLKKEEEDGAWLGRAQKAREKLFEKNVTPSDVGKLNRLVIPKLHAEKHFPLQNNNNEGISSSSAPKGLLLNFEDDGGKVWRFRYSYWNSSQCYVLTKGWSRFVKEKNLKAGDTVSFCRSTGSDRQLYIDWKSRGMFNPVGPVVQPVRLFGVNILKMPFPAKRKEMELLRV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0927 321 MobiDBLite consensus disorder prediction 29 58 - -
Mibi10g0927 321 SUPERFAMILY DNA-binding pseudobarrel domain 172 283 IPR015300 -
Mibi10g0927 321 SMART rav1_2 55 116 IPR001471 GO:0003700|GO:0006355
Mibi10g0927 321 Pfam B3 DNA binding domain 174 284 IPR003340 GO:0003677
Mibi10g0927 321 SUPERFAMILY DNA-binding domain 54 110 IPR016177 GO:0003677
Mibi10g0927 321 ProSiteProfiles AP2/ERF domain profile. 55 110 IPR001471 GO:0003700|GO:0006355
Mibi10g0927 321 CDD AP2 54 108 IPR001471 GO:0003700|GO:0006355
Mibi10g0927 321 Gene3D AP2/ERF domain 54 111 IPR036955 GO:0003700|GO:0006355
Mibi10g0927 321 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Mibi10g0927 321 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Mibi10g0927 321 ProSiteProfiles B3 DNA-binding domain profile. 174 283 IPR003340 GO:0003677
Mibi10g0927 321 Gene3D - 163 288 IPR015300 -
Mibi10g0927 321 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 50 310 IPR044800 GO:0003700
Mibi10g0927 321 CDD B3_DNA 172 267 IPR003340 GO:0003677
Mibi10g0927 321 FunFam AP2 domain-containing protein RAP2.8 54 111 - -
Mibi10g0927 321 Pfam AP2 domain 54 102 IPR001471 GO:0003700|GO:0006355
Mibi10g0927 321 SMART B3_2 174 285 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0927 Mibi-ChrMibi10 27131592 27132557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0927 5 307 B3 DNA Binding Superfamily AT1G25560 60.123 3.39e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Mibi10g0927 B3 5.5e-26 CL0405