Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0926 ATGGATGCAAGCAGTTGCATAGATGAAAGTACCACCAGCGATTCCATATCCATCTCCATATCCCTTTCTCCGGCGATCGCCGCCGTATCGCCGTTAACCGGAACTCCTAAGAACTCATCGCCGCCGCCTCCCAACCGTCTCTGCCGTGTCGGCAGCGGCGCCAGCACCATCGTCGACTCCGACAGTGGCGGCGCCGCCGTCGCCGCCGAGGCCGAGTCCCGGAAACTGCCATCATCAAAATACAAAGGCGTAGTCCCTCAACCCAATGGCCGATGGGGAGCCCAGATTTACGAAAAACACCAACGTGTCTGGCTCGGAACCTTCAACGAAGAAGACGAAGCCGCCAAAGCCTACGACATCGCCGCCCAGAGATTCCGCGGCAAAGACGCCGTCACAAACTTCAAAGCCCTCATCTCCGGCGACAACTCCGGCGACGGAGACATTGAATCGGAGTTTCTGAACTCGCATTCGAAATCTGAGATCGTGGACATGCTGAGGAAGCATACGTACAATGATGAGCTTGATCAGAGCAAGCGAAACCGTGGGTTTGACAGAGGAGGAGACGACGGGAGGTTGAAGAAGGAGGAGGACGGTGGAGGCGCGTGGTGTGCACGCGCGCACAAGGCGCGTGAACAGCTTTTCGAGAAAACCGTTACGCCGAGTGACGTGGGGAAGCTGAATCGGTTGGTTATACCGAAGCAGCACGCGGAGAAGCACTTCCCGTTACAGAACAACAACAATGAAGGCATTTCTTCATCTTCTTCTTCTTCTGCAGCGAAGGGTTTGCTTTTGAACTTCGAGGATGATGGTGGGAAGGTATGGAGGTTTAGGTATTCGTATTGGAATAGTAGTCAGAGTTATGTGTTGACCAAAGGGTGGAGTAGGTTTGTGAAGGAGAAGAATCTGAAAGCCGGTGATGCGGTTAGTTTTTACCGGTCCACCGGTTCGGACCGCCAGCTCTACATTGACTGGAAGGCACGGGATAGTAACCAGGCGGTCGGCGGCGAGGGGAATGGGATGGGGGGGTTGTATAATCCGGTCGGACCGGTGGTTGAGCCGGTGGTTCAGATGGTTCGGCTCTTTGGGGTGAACATTTTGAAAATGCAGCCGCCATTATTGGATGTGGGCTGCAATGGGAAGAGGAAGGAGATGGAGCTGTTAACGTTAGAGTTTAGCAAGAAGCCAAAGATAATTGGAGCTTTGTAA 1206 0.539 MDASSCIDESTTSDSISISISLSPAIAAVSPLTGTPKNSSPPPPNRLCRVGSGASTIVDSDSGGAAVAAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAAKAYDIAAQRFRGKDAVTNFKALISGDNSGDGDIESEFLNSHSKSEIVDMLRKHTYNDELDQSKRNRGFDRGGDDGRLKKEEDGGGAWCARAHKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQNNNNEGISSSSSSSAAKGLLLNFEDDGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVSFYRSTGSDRQLYIDWKARDSNQAVGGEGNGMGGLYNPVGPVVEPVVQMVRLFGVNILKMQPPLLDVGCNGKRKEMELLTLEFSKKPKIIGAL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0926 401 SUPERFAMILY DNA-binding pseudobarrel domain 212 325 IPR015300 -
Mibi10g0926 401 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Mibi10g0926 401 Pfam AP2 domain 79 127 IPR001471 GO:0003700|GO:0006355
Mibi10g0926 401 Gene3D AP2/ERF domain 79 136 IPR036955 GO:0003700|GO:0006355
Mibi10g0926 401 SMART rav1_2 80 141 IPR001471 GO:0003700|GO:0006355
Mibi10g0926 401 CDD B3_DNA 213 322 IPR003340 GO:0003677
Mibi10g0926 401 ProSiteProfiles AP2/ERF domain profile. 80 135 IPR001471 GO:0003700|GO:0006355
Mibi10g0926 401 MobiDBLite consensus disorder prediction 176 197 - -
Mibi10g0926 401 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 75 377 IPR044800 GO:0003700
Mibi10g0926 401 Pfam B3 DNA binding domain 214 325 IPR003340 GO:0003677
Mibi10g0926 401 Gene3D - 203 336 IPR015300 -
Mibi10g0926 401 SMART B3_2 214 328 IPR003340 GO:0003677
Mibi10g0926 401 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Mibi10g0926 401 FunFam AP2 domain-containing protein RAP2.8 79 136 - -
Mibi10g0926 401 ProSiteProfiles B3 DNA-binding domain profile. 214 328 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0926 Mibi-ChrMibi10 27083048 27084253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0926 5 401 B3 DNA Binding Superfamily AT1G25560 57.389 6.63e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Mibi10g0926 B3 1.7e-28 CL0405