Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0908 ATGAAGATTTTCGTTAAGACTCTCAAAGGAACTAGCTTCGACATCGAAGTCAAGCCTGAGGATACGGTTGCTGAAGTGAAGAGACATATAGAAACTGTCCAGGGTGCAGCTGTCTATCCTTCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTCAAAGATGGTACTACCTTGGGGGAAAATGAAGTAGTTGAAAACAGTTTTATTGTAATCATGCTATCAAAGGCTAAGAGCTCATCAGGCGAAGGATCTACTGCGCCTTCAGTTAAGACCCCTCAGACTAGTTCAGCTCCTACATCAGCCCCCGCGTCAACAGCAGCTCAAGTTCCTGCTGCAGCTGTGACTTCGTCTGCATCTGTTGATTCACCTGCACCTGCATCCTCACCTTCACCTGCTCCAGCTCCTGCCACGGAAGGGTCTGATGTCTATGGGCAGGCAGCATCTAATCTTGTTGCGGGGAACAACTTGGAGGGAACAATCCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGAGCTCTCCGTGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATACAGGTATCCCAGAGCAAGCTGAGGCTCCCCCTGTGGCTCGTGCACCTACAACTGGTGCCCAAGCTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCCGTTCCTTCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCCCAGGGCCTCCCAAATGTCGGTGCCGGTGCAGCTGGTGCAGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCATTGCGAGCGATGGTGCAGGCAAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAGCAAAATCCTCATCTAATGAGATTGATTCAAGAGCATCAAGCTGACTTTCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCTAATGCCATGCCGCAATCAGTATCTGTCACCCCTGAGGAGCGCCAAGCAATCGAACGTCTTGAAGCAATGGGATTCGATCGAGCACTTGTTTTGGAGGTGTATTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAACTACCTCTTAGATCACATGCATGAGTTTGAGGAATGA 1170 0.4846 MKIFVKTLKGTSFDIEVKPEDTVAEVKRHIETVQGAAVYPSAQQMLIHQGKVLKDGTTLGENEVVENSFIVIMLSKAKSSSGEGSTAPSVKTPQTSSAPTSAPASTAAQVPAAAVTSSASVDSPAPASSPSPAPAPATEGSDVYGQAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARAPTTGAQAGNAPSAAPQAAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLANAMPQSVSVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0908 389 FunFam UV excision repair protein RAD23 B 255 320 - -
Mibi10g0908 389 Gene3D - 337 384 - -
Mibi10g0908 389 Pfam UBA/TS-N domain 345 380 IPR015940 -
Mibi10g0908 389 Pfam UBA/TS-N domain 160 195 IPR015940 -
Mibi10g0908 389 MobiDBLite consensus disorder prediction 79 126 - -
Mibi10g0908 389 SMART uba_6 157 197 IPR015940 -
Mibi10g0908 389 SMART uba_6 345 382 IPR015940 -
Mibi10g0908 389 SUPERFAMILY UBA-like 154 208 IPR009060 GO:0005515
Mibi10g0908 389 SMART ubq_7 1 75 IPR000626 GO:0005515
Mibi10g0908 389 MobiDBLite consensus disorder prediction 208 249 - -
Mibi10g0908 389 Pfam XPC-binding domain 264 319 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mibi10g0908 389 SMART CBM 262 305 IPR006636 -
Mibi10g0908 389 Gene3D - 150 200 - -
Mibi10g0908 389 SUPERFAMILY XPC-binding domain 260 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mibi10g0908 389 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Mibi10g0908 389 FunFam UV excision repair protein RAD23 homolog 150 200 - -
Mibi10g0908 389 FunFam UV excision repair protein RAD23 homolog 336 384 - -
Mibi10g0908 389 Gene3D - 1 80 - -
Mibi10g0908 389 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mibi10g0908 389 PRINTS DNA repair protein Rad23 signature 290 312 IPR004806 GO:0006289
Mibi10g0908 389 PRINTS DNA repair protein Rad23 signature 339 355 IPR004806 GO:0006289
Mibi10g0908 389 PRINTS DNA repair protein Rad23 signature 356 370 IPR004806 GO:0006289
Mibi10g0908 389 PRINTS DNA repair protein Rad23 signature 371 386 IPR004806 GO:0006289
Mibi10g0908 389 CDD Ubl_Rad23 1 74 - -
Mibi10g0908 389 FunFam UV excision repair protein RAD23 1 80 - -
Mibi10g0908 389 SUPERFAMILY UBA-like 326 387 IPR009060 GO:0005515
Mibi10g0908 389 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 342 383 IPR015940 -
Mibi10g0908 389 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 198 IPR015940 -
Mibi10g0908 389 Gene3D - 255 320 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mibi10g0908 389 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mibi10g0908 389 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 378 - -
Mibi10g0908 389 MobiDBLite consensus disorder prediction 79 142 - -
Mibi10g0908 389 CDD UBA1_Rad23_plant 151 200 - -
Mibi10g0908 389 TIGRFAM rad23: UV excision repair protein Rad23 1 388 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0908 Mibi-ChrMibi10 26861645 26867357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0908 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.31e-09 54.3