Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0901 ATGTTGTCGTTGCAGATTTGGGGTTTCTCTGTTTCATCGTTGTTGAATCTTTCCTCACTAGTTCGCTCTGTAAGGCAGGGCTCCAGTTTGGTAAATCCCACCATCTCGATGCGTTTGAGGCCAAAAAGGACTTGTTCTGAAGTAGTCTGTTTTGAAATGACTAATCCCTTGACAAAACTCACAAAACCTGAGAACATGATGGGTTTCCCCAAAAAGGTAAAGAGAAAGCCTCATGTTCTTCGTGCTCTAAACAAGCCACTAATGTCCAGAAAAGTTCGGATTATTTTCAACGACCCTGATGCCACAGATTCATCTTCAAGTGAAGAAGAAGAAGAAAGCTTTGAAAGCAGAAAGCCCATGAAGATAAAACGATGTGTTCAAGAGCTCACTCTGCCTCTTTTACCAGAAAAGCCCAAACCCTTTGAAACTAATAGCTTGAAACATAGCTTTTTTAATGGTGGTTCAGTTAAAGGATATGATCCAGTTAAAACAAAACCACCCAGAAAACGTTCGTCTTCTCAATATAGAGGCGTTCGTCTCAGAAACTCAGGGAAATGGGCTGCGGAGATTCGTCATCCTATCAAGGGTCGAAAATGGTTGGGTACATTTGATACTCCAGAGGAAGCCTCTAATGCTTATGAAGCTAAAAGAAGAGAGTTTGAAGAATCCATGGATTTATCTTCCAGGAGCAATCTTACTGTTAGTGATTCTTCATATTCATTTTCTTCTGTGGAAGATTCTGGCAGTGTTGTTTCTCAGTTATCAACACCACCTTCTGTTCTTGAAGTTTATACTTCCAATGAGAATGGCCAGATTTCAAGAAGAGAAGTCTATCATTCTGAGTCTGCTCCTGTTTTGTCTTCATCATCATATGAGGATTACAAGAATTCTGGACATGAAGACAATGATTTGGCACCTAGATTTGATGCTCTAAAGGTGTCTGATTATTTGAGTAAGGTGAGAAATGACACTAATTTGGGGTCTGAACTTGAAGCAAGTATGGTTGTGAAGCCTGAGTTGAGTTATTTGGAGATGCCCATTTCAGAGCCTAACCTGTTTAAGATGGATTGTTTAATGGTGAATGATATGGACAAGATTTTTGAAGATGATGATGATTTTTATGGGTTGCTGAGTGGTGGGATTTGTGGGATTAATGCTGATGTGCCTTGTGAGCTTCCTGATTATGATTTTGGAGATTTTGGTGATGATGAGTTTGCTGGTTGGATTGAGCAAACCCTCAATATGTTACCTTGTGCATGA 1260 0.3992 MLSLQIWGFSVSSLLNLSSLVRSVRQGSSLVNPTISMRLRPKRTCSEVVCFEMTNPLTKLTKPENMMGFPKKVKRKPHVLRALNKPLMSRKVRIIFNDPDATDSSSSEEEEESFESRKPMKIKRCVQELTLPLLPEKPKPFETNSLKHSFFNGGSVKGYDPVKTKPPRKRSSSQYRGVRLRNSGKWAAEIRHPIKGRKWLGTFDTPEEASNAYEAKRREFEESMDLSSRSNLTVSDSSYSFSSVEDSGSVVSQLSTPPSVLEVYTSNENGQISRREVYHSESAPVLSSSSYEDYKNSGHEDNDLAPRFDALKVSDYLSKVRNDTNLGSELEASMVVKPELSYLEMPISEPNLFKMDCLMVNDMDKIFEDDDDFYGLLSGGICGINADVPCELPDYDFGDFGDDEFAGWIEQTLNMLPCA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0901 419 MobiDBLite consensus disorder prediction 280 299 - -
Mibi10g0901 419 PRINTS Ethylene responsive element binding protein signature 196 212 IPR001471 GO:0003700|GO:0006355
Mibi10g0901 419 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Mibi10g0901 419 Pfam AP2 domain 174 222 IPR001471 GO:0003700|GO:0006355
Mibi10g0901 419 CDD AP2 173 215 IPR001471 GO:0003700|GO:0006355
Mibi10g0901 419 ProSiteProfiles AP2/ERF domain profile. 174 233 IPR001471 GO:0003700|GO:0006355
Mibi10g0901 419 SUPERFAMILY DNA-binding domain 173 220 IPR016177 GO:0003677
Mibi10g0901 419 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 89 265 - -
Mibi10g0901 419 SMART rav1_2 174 239 IPR001471 GO:0003700|GO:0006355
Mibi10g0901 419 Gene3D AP2/ERF domain 173 226 IPR036955 GO:0003700|GO:0006355
Mibi10g0901 419 MobiDBLite consensus disorder prediction 156 177 - -
Mibi10g0901 419 MobiDBLite consensus disorder prediction 98 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0901 Mibi-ChrMibi10 26645164 26646718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0901 57 411 AP2-EREBP Transcription Factor Family AT1G68550 30.137 1.63e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi10g0901 AP2 5.7e-08 CL0081