Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0883 ATGGATCAACCGCTTAAGTTGCCACTGATTCAGTTAACGGAAGGCCTAGGGGAGAATTCTTCTTCTTCTTCTCTACATCCTGCAGATTTTCCAGAAATGAGAAAGGGTTTCTTTTCTTGTGTTGTTTGCAATCAACAGAAAGCAGTTGGATTCAAAAGGAAGAGAGACAATAACAAAAGCATAGAAGAGAAACAGAAAGAAGTAATACATGTAAGGGCAAAAAGAGGTCAAGCTACTGATAGCCACAGCTTAGCTGAACGGGTGAGAAGAGAGAAAATCAATGAGAAGCTGAGATGTTTGCAAGACCTGGTTCCAGGCTGTTACAAGGCAATGGGGATGGCAGTTATGTTAGATGTGATCATAAACTACGTTCTATCACTGCAGCAACAGATTGAGTTTCTCTCCATGAAGCTCTCAGCAGCAAGCATGTACTTTGATTTCAACACCTACCAGATAGATACCCTCCAAACCATGCAGAGAAGTACCAGCACAGATGGAATCCAAGGGATGGAAAGGACTGAAGGAGAAGGTTATGAATGCTTTGCTTATTGGAATCCAACATGGCCACTTCAATAA 576 0.4184 MDQPLKLPLIQLTEGLGENSSSSSLHPADFPEMRKGFFSCVVCNQQKAVGFKRKRDNNKSIEEKQKEVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKAMGMAVMLDVIINYVLSLQQQIEFLSMKLSAASMYFDFNTYQIDTLQTMQRSTSTDGIQGMERTEGEGYECFAYWNPTWPLQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0883 191 Pfam Helix-loop-helix DNA-binding domain 81 105 IPR011598 GO:0046983
Mibi10g0883 191 SMART finulus 83 133 IPR011598 GO:0046983
Mibi10g0883 191 CDD bHLH_AtBPE_like 67 152 - -
Mibi10g0883 191 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 49 156 IPR024097 GO:0006355
Mibi10g0883 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Mibi10g0883 191 Gene3D - 77 140 IPR036638 GO:0046983
Mibi10g0883 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0883 Mibi-ChrMibi10 26140502 26141936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0883 63 159 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 77.320 1.16e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi10g0883 HLH 5.4e-05 No_clan