LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g0861	ATGAAATTTAGTATTGCTTCTCACGATTCTCTTCTAACTTTCCTGTGTGTGTGTTGTTTTCTGCTTCCTGTGTCAGCTGCGTGCCCAGGGCCTCTTCAATGTGGATATCTTGGGGAAATTAACTTCCCCTTCGACAACACAACAAACTCACCATGTGGTTTGCTACCCATAGAAGGTTGTGATGATCCATCGAAACACAAAAAGGTCCAATTAGGAGGAGAATCGTTCGAGGTTAAGAAAATCTACCAGAAGGATGGCCAACATGTAATCATCCTTGCTTTTGCAGAGCACTGGGGATCTAATCCGTGCCATGCCTTGGACTACATAGTCTATTTTCCTGCGGAATATCCTAAGCTTTCTTTCTCTATTTTAAACGGGATTCCCCTTTTGAAATGTGACAAACCTCTCCCCTATGTCAAAGCCTTCGATCAAATCTCGGGCTATGAGTGTTCTTACTACAACATTTACAATACTACCAATGAAGCTCGTCAGTGGCTCGACCCTTTCGGAGAATGTTCTCTCATCCACCTTCCATTTCAACATCAAGATCCAGACCCAACTAACATATACTTATCCGATGAGATCTATATTCAAGTACATGTATCTCTCCCTTGTCTTCCTGATGGCAAATGCAATGAGCCCAAGAAAATCGATTCCAAGTCTATCACAATAGGCGTAGTTATTGGGAGTGGTGGTGTGATTATAATTGGCTTGATTGTTATTCTATTGCGGAATAAACGAATATACAAGTCTGTAGCCTCACAAAATCAGTCAAGAAGCATTGAATCTGATAAAACTCACTCAAGAAGCGATCAATTTGATAATATTCATTCCAATGCAATCCTAGAAAGTAGAAATATCTACTTTGGGGTCCCTCTCTTCTCCTATGAAGAACTTGAAGAAGCTACAAACAAATTTGATCAATCAAAAGAACTTGGAAGTGGAGGCTTTGGAACTGTTTATTACGGAAAGCTTAAAGATGGACGAGAAGTTGCTGTGAAGCGCCTATTTGAGCGCAACTATAAACGTGTACAACAATTCATCAATGAAGTTAAGATCCTCACACGTTTGCGCCACAGAAACCTTGTGTCACTCTATGGTTGCACTTCGCGTGCCAGTCATGAACTGCTGCTTGTCTATGAATACATTTCAAATGGAACTCTTGGTTGTCATCTCCATGGAAATCTAGCAAAACCTGGTTCACTTCCATGGCCTGTGAGGATGAGGATTGCCATAGAGACAGCAAATGCATTGTCCTATCTCCATGCTTGTGACATCATTCACCGTGATGTCAAATCCAGCAACCTTCTTCTTGATTATCATTTCTGTGTCAAGGTTGCTGACTTTGGTCTTTCGAGGTTGTTCCCGAAATTTGTCTCTCATGTCTCCACAGCTCCAGCAGGAAGTCCCGGTTATTTGGACCCCGAATATCACCAGTGCTACCAGCTTACTGAAAAGAGTGATGTTTATAGCTTTGGGGTCGTTCTCATTGAGCTCATATCTTCTAAGCCAGCTATCGATGTTAGAAGGCACAAGGATGAGATCAAACTGGCAAATATGGCAGTTAGCAAGATTCAAAGAGGAGCATTCAATGAGCTGGTAGATCCTTCACTTGGTTTTGAGTCAGATAATGAGGTTAAGAAGATGATAATCTCGGTGGCCAAGTTAGCTTTTCATTGCCTACAGAGGGATAGGGAGCTGAGACCTTCCATGGATGAAGTGATGGAATTTCTGCAGAAAATTGAAAATGGGAATCATGATCTTAAGCATCTGGATATTCAATGTGCCAAGTTTACAAACCGGGAGATTCATGCATCTCTCCCTACCTCAGTGCAAAAGGATGGAGCTGCATTATTGAACAACTCGAAGCCACAACGCCCTCCCCGTTCAGTATGA	1896	0.4209	MKFSIASHDSLLTFLCVCCFLLPVSAACPGPLQCGYLGEINFPFDNTTNSPCGLLPIEGCDDPSKHKKVQLGGESFEVKKIYQKDGQHVIILAFAEHWGSNPCHALDYIVYFPAEYPKLSFSILNGIPLLKCDKPLPYVKAFDQISGYECSYYNIYNTTNEARQWLDPFGECSLIHLPFQHQDPDPTNIYLSDEIYIQVHVSLPCLPDGKCNEPKKIDSKSITIGVVIGSGGVIIIGLIVILLRNKRIYKSVASQNQSRSIESDKTHSRSDQFDNIHSNAILESRNIYFGVPLFSYEELEEATNKFDQSKELGSGGFGTVYYGKLKDGREVAVKRLFERNYKRVQQFINEVKILTRLRHRNLVSLYGCTSRASHELLLVYEYISNGTLGCHLHGNLAKPGSLPWPVRMRIAIETANALSYLHACDIIHRDVKSSNLLLDYHFCVKVADFGLSRLFPKFVSHVSTAPAGSPGYLDPEYHQCYQLTEKSDVYSFGVVLIELISSKPAIDVRRHKDEIKLANMAVSKIQRGAFNELVDPSLGFESDNEVKKMIISVAKLAFHCLQRDRELRPSMDEVMEFLQKIENGNHDLKHLDIQCAKFTNREIHASLPTSVQKDGAALLNNSKPQRPPRSV	631

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g0861	631	SMART	serkin_6	306	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi10g0861	631	FunFam	Wall-associated receptor kinase-like 20	383	590	-	-
	Mibi10g0861	631	ProSitePatterns	Protein kinases ATP-binding region signature.	312	334	IPR017441	GO:0005524
	Mibi10g0861	631	ProSiteProfiles	Protein kinase domain profile.	306	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi10g0861	631	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	28	-	-
	Mibi10g0861	631	Pfam	Protein kinase domain	307	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi10g0861	631	Gene3D	Phosphorylase Kinase; domain 1	280	382	-	-
	Mibi10g0861	631	Gene3D	Transferase(Phosphotransferase) domain 1	383	594	-	-
	Mibi10g0861	631	SUPERFAMILY	Protein kinase-like (PK-like)	287	583	IPR011009	-
	Mibi10g0861	631	FunFam	receptor-like protein kinase FERONIA	266	382	-	-
	Mibi10g0861	631	CDD	STKc_IRAK	312	581	-	-
	Mibi10g0861	631	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	23	613	IPR044652	GO:0004672
	Mibi10g0861	631	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	426	438	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g0861	Mibi-ChrMibi10	25654791	25657178	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g0861	209	631	Receptor kinase-like Gene Family	AT1G25390	51.636	1.68e-138	416

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Mibi10g0861		Pkinase	4.8e-47	CL0016