Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0792 ATGTCAAGAGAGGCAGTGAAAGGTGTGAATATTGTTGATGAATTTCAGAGAGATATATCATTCAATGAAAGGAAAAAAACTATAATGAAGAAGTCAAATGAACTTAGCATCCTTTGTAGTGTTGAGGTCGGAGCAATAATTTACAGTGGTAATCCCTCTGATCCTGAGCCAGAAGTTTGGCCGGACCATGAAGGTATCCAAAAAATAATTGAAAATTTTCAAGCTATATCTGAGACACATATACCATTGGATAGAGAAGAATTATTGCAAAGTAAGATTAATGAAGGGAAAGAACTTCTAAGGAAACGACGACAAGAGAATCGTGTAGAAGAGATTTCCCAACAAATGATCCAATGTATGTTAGGGGGAAAAATGCCCAACCTTACTAATTGGAATGATATGAAGATGATGGTTGAGCAGAGTTTGAAGAACATAGATACGACAGAGCAAGAATATGGCCATGAAGCGGAATTCTCCATTCCACCTTCTTCAATATCACAGGATTTTCCAATTTTCAGAGAGAATGAGATGTTGCAGCCATCTAGCAATGCTTATCCCTATATTCTGAATCCTCCAACACCTGAACAACCGATATCTAGTTTACAAAATGAAAACTAG 618 0.3689 MSREAVKGVNIVDEFQRDISFNERKKTIMKKSNELSILCSVEVGAIIYSGNPSDPEPEVWPDHEGIQKIIENFQAISETHIPLDREELLQSKINEGKELLRKRRQENRVEEISQQMIQCMLGGKMPNLTNWNDMKMMVEQSLKNIDTTEQEYGHEAEFSIPPSSISQDFPIFRENEMLQPSSNAYPYILNPPTPEQPISSLQNEN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0792 205 MobiDBLite consensus disorder prediction 182 205 - -
Mibi10g0792 205 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Mibi10g0792 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Mibi10g0792 205 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Mibi10g0792 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi10g0792 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi10g0792 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi10g0792 205 SUPERFAMILY SRF-like 3 91 IPR036879 GO:0003677|GO:0046983
Mibi10g0792 205 CDD MADS_SRF_like 11 73 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mibi10g0792 205 PANTHER MADS BOX PROTEIN 11 145 - -
Mibi10g0792 205 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0792 Mibi-ChrMibi10 22561239 22561856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0792 1 146 Type I MADS-box Gene Family AT5G48670 37.500 2.85e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi10g0792 SRF-TF 1e-12 No_clan