Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi10g0760 | ATGGGGGATCACTTTGTGTTGCTGGTTGATCGTTTGCTCACTGAAGCAACATTAGAAGCTGCTCTTGAAAGCAGAAATCGTGCAATGCAGGAGGCTGCAGCCTCAGCTGTGAATGAAGCGTCAGAAGTTGATGTATCTTTGATAAAGATGGATGTGGAAAATGTGAATTCTCCGAGGAAGATTGTTGAATGTCGGATATGTCATGATGAGGATGAAAATTCCAACATGGAGACACCATGCTCTTGTTGTGGTAGCTTGAAGTATGCACACCGCAGATGTATACAAAGGTGGTGTAATGAGAAGGGTGACACCATCTGTGAGATATGCCACCAGCAATATAAACCTGGTTATACCGCTCCGCCTCCATTATTTCAATTCGGAAGAATTCCAATGACTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGATTTGAACCATGGTCATTTGGTTCGCATGGTTTCCACGGACCAGAATTTTAACAATTCTAACTATGACCAGTATTCAGCTTCTACTGCCGGAAGTTTACTGTGCTGTCGTTCATTTGCTCTCATTTTCATGGTTTTGCTTATTCTAAGACATACACTTCCTCTCATAATCAATGGAAACAAGGACTACTCCATTTCTCTGTTATTGTTGTTACTAATTCGAACTGCGGGGATTGTTGTTCCCATATATTTCATGGTGAAAGCAGTGACATCTATACAGCGCCATCGGCGACAGCGACAACAACATCAACAACAACAACAACAGGAGCCTCCTAATGCCTTGGTCAACCTATCGGATGACGAAAGCGAGCAAGTAGCTTTGCCATCTCAGCTTCACGTCATTCGCGTTCAGTGA | 840 | 0.431 | MGDHFVLLVDRLLTEATLEAALESRNRAMQEAAASAVNEASEVDVSLIKMDVENVNSPRKIVECRICHDEDENSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTICEICHQQYKPGYTAPPPLFQFGRIPMTFRGNWEISRRDLNHGHLVRMVSTDQNFNNSNYDQYSASTAGSLLCCRSFALIFMVLLILRHTLPLIINGNKDYSISLLLLLLIRTAGIVVPIYFMVKAVTSIQRHRRQRQQHQQQQQQEPPNALVNLSDDESEQVALPSQLHVIRVQ | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi10g0760 | 279 | CDD | RING_CH-C4HC3_MARCH | 64 | 110 | - | - | |
| Mibi10g0760 | 279 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 119 | IPR013083 | - | |
| Mibi10g0760 | 279 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 56 | 116 | IPR011016 | GO:0008270 | |
| Mibi10g0760 | 279 | Pfam | RING-variant domain | 64 | 109 | IPR011016 | GO:0008270 | |
| Mibi10g0760 | 279 | Pfam | Protein of unknown function (DUF3675) | 115 | 231 | IPR022143 | - | |
| Mibi10g0760 | 279 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 245 | IPR033275 | - | |
| Mibi10g0760 | 279 | SUPERFAMILY | RING/U-box | 62 | 114 | - | - | |
| Mibi10g0760 | 279 | FunFam | Zinc finger family protein | 52 | 119 | - | - | |
| Mibi10g0760 | 279 | SMART | ringv_2 | 63 | 110 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi10g0760 | Mibi-ChrMibi10 | 21148613 | 21151236 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi10g0760 | 41 | 109 | C3H Transcription Factor Family | AT5G05830 | 34.146 | 1.35e-07 | 49.3 |