Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0736 ATGGCCGGTGAAGCTGCCGGCGCCGTCGCCGGAGATCGAACTCCGGAGCTAATTGGTCTAATTCACGACATTGTTGGAATGTGTGGTGGAGTTGTTGGTTGTGGATCTTCTTCTTCTGGTACTACTACTACTACTACTTCCATTGAAGCCGATGCTTTGTTCAAGAAGGATTGTACCGATCTGGTTCGTCGGATCTCTTTACTTACTTATTTGTTTGAGGAGATTCGAGATTCGAAGAAGGCTGCCATTGATTCTGGAATCTCTGATGCTTCTACTTCTTCCACTGGTTGTTCTGCTTCTTCTTGGTCTTCTGATCTTGTGCTCGCTCTTCACTCTGCTAAACGCTTGATTTCAGTCGCCAGGAACTTTCGCTCTAATTCATCTTCTGATGGAGCTGCCAAGACAATTGTATTCCAGTTTCAGTGTGTGACATGGAAATTGGAAAAGCTATTGAGCGTCCTACCCTATGATGATCTAGACATATCAGAGGAAGTCAGGGAACAGGTGGAGTTGGTCAGAACACAATTGAGACGAGCCACTGAAAAATATGAATACATGATTTCAAAGTTGTCACCTTGTGACTTATCTCAGCCAATGGATGTAGAAATTAGTCAAAATCTTGGTAGATCTCTGAGTGGATTGCATAAACAGCATAGCTGTCCTGCTCATTTATTAAATGTAGAAAGCATTACGAGAAGTGACGGATGGGCAAGTTGCTGCACGAATCAGACAAGCCCTCACTTGGAAAGGGCTCAGAGCATCCCTGTATCGACTGACGTTTCATTATCAAATCTTGTTGATCCTGAAGGTCAAGAAAATTCTGCGAAAAAAAGTCTGACTGAAGTGAAAAAGCCTGAGGCAATTCGCATTCCTGAAGATTATCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTAGCCACTGGTCAGACATATGAGAGATCTTACATTCAGAGATGGATAGATGGGGGGAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACACTTACACCAAACTATGTGTTAAGGAGCCTTATAACACAGTGGTGTATGGAGCATAATATTGAGCAGCCAACAGGACTTACAAATGGCAAGATAAAAAAGAGTGATGGATCATTCAGAGATGTTACGGGTGACATGGCAGCCATTGGAGCTCTTGTCCAGAAGCTCTCAAGCCAGAACATCGAGGAGCGCAGAGCAGCTGTTGCTGAAATTCGATCGCTTTCCAAACGAAGTACAGATAACAGAATACTGATTGCTGAAGCAGGAGCAATCCCAATTCTTGTTAACCTTTTAACATCAGAAGATGTGTTGACTCAAGAAAATGCTGTTACTTCCATTCTCAACCTCTCTATATACGAGAACAACAAAGGACTTATAATGCTAGCTGGTGCCATTCCATCCATTGTCCAAATCCTAAGAGCTGGAAGTATGGAAGCAAGAGAAAATGCAGCGGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATTATCGGTGCCTCTGGAGCTATTCTTGCTTTGGTCGAATTGCTTCAAAGTGGGAGCCCTAGAGGGAAGAAGGACGCTGCAACAGCGTTGTTCAACTTATGCATATATCAAGGAAACAAGGGCCGGGCCATAAGAGCAGGGATCATTACAGCATTGTTGAAGATGCTCACAGACTCTAGCAAATCGATGGTCGACGAAGCCTTGACAATAATGTCGGTTCTTGCGAGCCACCAAGAAGCAAAGGTTGCTATTGTGAAGGCCAGCACTATACCTGTTCTTATTGATCTATTGAGGACTGGATTGCCTCGAAACAAAGAAAACGCAGCTGCCATTTTACTGGCCTTATGTAAGCGGGATCCTGAAAATTTGTCATGCATTAGTCGACTTGGTGCTATCATACCTTTGACAGAACTTGCTCGGGGTGGCACAGAGAGGGCTAAAAGGAAGGCTACTTCACTATTAGAGCATCTTCGAAAGTTACAACATATTTGA 2010 0.4353 MAGEAAGAVAGDRTPELIGLIHDIVGMCGGVVGCGSSSSGTTTTTTSIEADALFKKDCTDLVRRISLLTYLFEEIRDSKKAAIDSGISDASTSSTGCSASSWSSDLVLALHSAKRLISVARNFRSNSSSDGAAKTIVFQFQCVTWKLEKLLSVLPYDDLDISEEVREQVELVRTQLRRATEKYEYMISKLSPCDLSQPMDVEISQNLGRSLSGLHKQHSCPAHLLNVESITRSDGWASCCTNQTSPHLERAQSIPVSTDVSLSNLVDPEGQENSAKKSLTEVKKPEAIRIPEDYLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQHLTLTPNYVLRSLITQWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDMAAIGALVQKLSSQNIEERRAAVAEIRSLSKRSTDNRILIAEAGAIPILVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAILALVELLQSGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDPENLSCISRLGAIIPLTELARGGTERAKRKATSLLEHLRKLQHI 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0736 669 FunFam RING-type E3 ubiquitin transferase 569 668 - -
Mibi10g0736 669 CDD RING-Ubox_PUB 294 336 IPR045210 -
Mibi10g0736 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 368 IPR013083 -
Mibi10g0736 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 595 IPR000225 GO:0005515
Mibi10g0736 669 Gene3D - 369 668 IPR011989 -
Mibi10g0736 669 Coils Coil 162 182 - -
Mibi10g0736 669 FunFam RING-type E3 ubiquitin transferase 289 364 - -
Mibi10g0736 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Mibi10g0736 669 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Mibi10g0736 669 FunFam RING-type E3 ubiquitin transferase 467 567 - -
Mibi10g0736 669 Pfam U-box domain 290 361 IPR003613 GO:0004842|GO:0016567
Mibi10g0736 669 PANTHER U BOX DOMAIN-CONTAINING 55 664 - -
Mibi10g0736 669 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Mibi10g0736 669 SMART arm_5 625 665 IPR000225 GO:0005515
Mibi10g0736 669 SMART arm_5 460 500 IPR000225 GO:0005515
Mibi10g0736 669 SMART arm_5 419 459 IPR000225 GO:0005515
Mibi10g0736 669 SMART arm_5 583 623 IPR000225 GO:0005515
Mibi10g0736 669 SMART arm_5 501 541 IPR000225 GO:0005515
Mibi10g0736 669 SMART arm_5 542 582 IPR000225 GO:0005515
Mibi10g0736 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Mibi10g0736 669 SUPERFAMILY ARM repeat 389 663 IPR016024 -
Mibi10g0736 669 FunFam RING-type E3 ubiquitin transferase 373 466 - -
Mibi10g0736 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515
Mibi10g0736 669 SUPERFAMILY RING/U-box 287 364 - -
Mibi10g0736 669 Pfam Armadillo/beta-catenin-like repeat 420 458 IPR000225 GO:0005515
Mibi10g0736 669 Pfam Armadillo/beta-catenin-like repeat 502 540 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0736 Mibi-ChrMibi10 20361242 20364223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0736 52 665 U-box Gene Family AT1G23030 62.927 0.0 723