Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0608 ATGGGGTCCAGTTCAACAGCCAAATTAAAGAACCACAATCACTGGAGATGCTTCAGCAATTTCCACTTCCACTGCTGTGGCAACCTGTCGCCTGAGCCACACTATCCGTCAATGACAAGATTTCCCGAAGAGGCGATGAGTTTTCGAGAGGACAAAGCAATTTTCAACGTCAAAGGCATGACGTGTGCTGCTTGTGCTGGATCAGTGGAAAAGGCAGTCAAACGCCTCCCTGGAATTCGCGATGCCGTCGTTGATGTCTTGAACGATAAAGCTTTGGTTCGTTACTTTCCGACGATGGTTTCCGAGGAGAGGATAAAAGAGGCCATTGAAGACGCTGGATTTGAAGCCAAGTCCATCAAAGAAGAATCAAACAAGAAGCCTTCCCAAATCTGCCGAATACACATAAAGGGTATGACATGTACTTCTTGCTCCTCCACTGTTGAATCCGTTCTTCAAGCCATTCCTGGAGTTCAGGAAGCACAAGTGGCCTTGGCAACTGAAGAAGCTCAAGTCCGTTATGACCCATATATTGCCACCTACAATCACCTAAAGAAAGCCATTGAAGATGCAGGATTTGAAGCCATACTAGTAAGCACAGGTGAACACATTAGCAAAATAGAGTTGAAAATTGAAGGCCTAAAAAACGATCAACCTTTGAGGGAGATTGAAAAATCTCTCAAGAAACTTCCAGGAGTTGAAAACATAGACATTAATCAAGAAATGAACAAGGTTTCCATTTCTTACAAACCATACATGACAGGACCCAGAACTTTCATTGAAGTCATAGAATCTTCAACGGCCTCTTGGGGTTTCAAGGCCATGATATTTCCTGATGGAGGAGGAAGAAGGGACACTCATAAACAAGAGGAAATCAAGAAATACTTCAAGTTATTCTTATGGAGTTTGGCTTTATCCATTCCTGTTTTTCTATCATCCATGGTCCTCATGCACATTCCTGGAATTATGCATGTTTTAGATATGAAAGTGGTGAACAACCTAACTATTGGACTCCTCATGAGGTGGGAATTTTCGACACCAGTACAGTTCTACATAGGCATGAGATTCTACACAGGGGCTTACAAATCTCTGCGCAATGGTTTGGCTAATATGGATGTATTAATTGCCTTGGGAACAAATGCAGCTTACTTCTATTCTGCATATGTTGCAGTTAGAGCTGCCTTATCTAGAGACTTCATGGGCAGTGATTGTTTTGAGACCAGCTCTATGCTTATCTCATTTATTATGTTAGGCAAGTATCTGGAAGTGTTAGCAAAGGGAAAGACATCACAAGCCATTGCAAAACTCATGGAATTGACTCCTGATACGGCAACATTGTTAACTCTAGATGGTGAAGGCAATAATGTAATAAGTGAACAGCAAATAGATAGTCGGTTGATACAAAAAGATGATGTAATAAAGATTGTACCTGGTGCTAAAGTAGCATCGGATGGTTTTGTGATTTGGGGACAAAGTCACATAAATGAGAGCATGATAACAGGAGAAGCCAGGCCTGTGGCAAAGATGAAAGGTGACATGGTGATTGGAGGTACTGTGAATGGCAATGGGGTTTTGCATGTGAAGGTGACCAGAGTTGGATCAGAGAGTGCCCTCTCACAGATTGTTCAACTCGTTGAGTCATCCCAGATGGCTAAAGCTCCTGTTCAGAAGCTTGCAGACCGTATTTCCAAGTACTTTGTGCCACTGGTTATAATGCTTTCTCTTGCAACTTGGCTGTCCTGGTTTGTAGCTGGACAATTACATACATACCCGAAATCTTGGATTCTATCCTCCATGAACAGCTTTGAGCTTGCACTTCAGTTTGGGATATCTGTGATGGTCATAGCCTGTCCTTGTGCTTTAGGCCTAGCCACTCCTACAGCTGTCATGGTTGGTACTGGAGTTGGTGCAACTCAGGGCGTGTTAATCAAAGGTGGCCAAGCATTAGAAAAGGCACATAAGGTGAATTGCATTGTCTTTGATAAGACGGGAACTCTAACAATTGGTAAGCCAGTCATTGTTACCACAAAACTTTTCAAGAAGATAACTCTCACAGATTTCTACAAATTTGTCGTTGCAACCGAGGTGAACAGTGAACATCCAATAGCCAAGGCCATTGTTGAGCATGCTGAGCAAGCCATAAAAGGTGATGAAAAGAACCTTGCAAATCCAGAAGCACATGACTTTGTTTCCATTTCAGGTCATGGAGTGAAGGCTAGTGTACGAGACAAGGAAATAATAGTTGGGAATAGGAAGTTGATGTTGGAACATAACATAGTCATTCCGGTGGATGCTGAGGAGACACTAGCAGAGGCTGAGAGGTTGGCACAAACTGGAATTATAGTGTCCATAGATAGAGAAATTGCAGGAGTCATAGCAATATCTGATGCGTTGAAACCAAGTGCCAAAGAAGTCATTTCTATTCTTAACTCCATGAAAATCATGTGTGTCCTGGCAACAGGAGATAACTGGGGAACTGCAAATTCCATTGCCAGACAAGTTGGGATCGAAATTGTCATAGCTGAAGCTCAGCCTGAGGTTAAAGCAGACAAAGTAAAAGATTTGCAGACTTCTGGATACACTGTGACAATGGTGGGAGATGGCATCAATGATTCACCAGCACTTGTGGCAGCTGATGTGGGAATGGCAATTGGTGCCGGCACAGATATTGCTATTGAGGCAGCTGACATAGTGCTCATGAAGAACAACTTGGAAGACATAATAATTGCCATTGATCTTGCCAAGAAAACTTTCTCTAGGATACGTCTAAACTACATTTGGGCTCTGGGATACAATCTGCTGGCAATCCCAATAGCTGCAGGAATCCTTTACCCATTCACTGAATTCCGGTTACCGCCATGGCTCGCCGGAGCTGCAATGGCAGCATCTTCCGTCAGTGTTGTGTGCTCCTCCCTCTTGTTAAAGAACTACAGGAGACCCCAGAAACTGAGTAACATGGACATAAATGGAATTAAGATCGAATAA 2982 0.4302 MGSSSTAKLKNHNHWRCFSNFHFHCCGNLSPEPHYPSMTRFPEEAMSFREDKAIFNVKGMTCAACAGSVEKAVKRLPGIRDAVVDVLNDKALVRYFPTMVSEERIKEAIEDAGFEAKSIKEESNKKPSQICRIHIKGMTCTSCSSTVESVLQAIPGVQEAQVALATEEAQVRYDPYIATYNHLKKAIEDAGFEAILVSTGEHISKIELKIEGLKNDQPLREIEKSLKKLPGVENIDINQEMNKVSISYKPYMTGPRTFIEVIESSTASWGFKAMIFPDGGGRRDTHKQEEIKKYFKLFLWSLALSIPVFLSSMVLMHIPGIMHVLDMKVVNNLTIGLLMRWEFSTPVQFYIGMRFYTGAYKSLRNGLANMDVLIALGTNAAYFYSAYVAVRAALSRDFMGSDCFETSSMLISFIMLGKYLEVLAKGKTSQAIAKLMELTPDTATLLTLDGEGNNVISEQQIDSRLIQKDDVIKIVPGAKVASDGFVIWGQSHINESMITGEARPVAKMKGDMVIGGTVNGNGVLHVKVTRVGSESALSQIVQLVESSQMAKAPVQKLADRISKYFVPLVIMLSLATWLSWFVAGQLHTYPKSWILSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALEKAHKVNCIVFDKTGTLTIGKPVIVTTKLFKKITLTDFYKFVVATEVNSEHPIAKAIVEHAEQAIKGDEKNLANPEAHDFVSISGHGVKASVRDKEIIVGNRKLMLEHNIVIPVDAEETLAEAERLAQTGIIVSIDREIAGVIAISDALKPSAKEVISILNSMKIMCVLATGDNWGTANSIARQVGIEIVIAEAQPEVKADKVKDLQTSGYTVTMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNNLEDIIIAIDLAKKTFSRIRLNYIWALGYNLLAIPIAAGILYPFTEFRLPPWLAGAAMAASSVSVVCSSLLLKNYRRPQKLSNMDINGIKIE 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0608 993 Pfam E1-E2 ATPase 438 636 - -
Mibi10g0608 993 CDD HMA 55 117 IPR006121 GO:0046872
Mibi10g0608 993 SUPERFAMILY HMA, heavy metal-associated domain 200 277 IPR036163 GO:0046872
Mibi10g0608 993 SFLD p-type atpase 640 915 IPR044492 -
Mibi10g0608 993 FunFam Probable copper-transporting ATPase HMA5 768 921 - -
Mibi10g0608 993 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Mibi10g0608 993 PRINTS P-type cation-transporting ATPase superfamily signature 658 672 - -
Mibi10g0608 993 PRINTS P-type cation-transporting ATPase superfamily signature 811 821 - -
Mibi10g0608 993 PRINTS P-type cation-transporting ATPase superfamily signature 494 508 - -
Mibi10g0608 993 PRINTS P-type cation-transporting ATPase superfamily signature 887 899 - -
Mibi10g0608 993 PRINTS P-type cation-transporting ATPase superfamily signature 789 800 - -
Mibi10g0608 993 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872
Mibi10g0608 993 SUPERFAMILY HAD-like 657 970 IPR036412 -
Mibi10g0608 993 Gene3D - 425 548 - -
Mibi10g0608 993 SUPERFAMILY Calcium ATPase, transmembrane domain M 409 650 IPR023298 -
Mibi10g0608 993 FunFam ATPase copper transporting beta 124 199 - -
Mibi10g0608 993 FunFam Copper-transporting ATPase HMA5 50 121 - -
Mibi10g0608 993 Pfam Heavy-metal-associated domain 133 193 IPR006121 GO:0046872
Mibi10g0608 993 Pfam Heavy-metal-associated domain 221 264 IPR006121 GO:0046872
Mibi10g0608 993 Pfam Heavy-metal-associated domain 55 115 IPR006121 GO:0046872
Mibi10g0608 993 Gene3D - 745 795 IPR023299 GO:0000166
Mibi10g0608 993 Gene3D - 665 744 IPR023299 GO:0000166
Mibi10g0608 993 TIGRFAM TIGR00003: copper ion binding protein 133 194 IPR006122 GO:0005507
Mibi10g0608 993 TIGRFAM TIGR00003: copper ion binding protein 54 116 IPR006122 GO:0005507
Mibi10g0608 993 FunFam Copper-transporting ATPase 1, putative 425 548 - -
Mibi10g0608 993 Gene3D - 625 921 IPR023214 -
Mibi10g0608 993 Gene3D - 204 276 - -
Mibi10g0608 993 ProSiteProfiles Heavy-metal-associated domain profile. 130 196 IPR006121 GO:0046872
Mibi10g0608 993 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 370 973 IPR027256 GO:0006812|GO:0016020|GO:0019829
Mibi10g0608 993 CDD HMA 135 194 IPR006121 GO:0046872
Mibi10g0608 993 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872
Mibi10g0608 993 PRINTS Copper-transporting ATPase 1 signature 107 127 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase 1 signature 78 101 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase 1 signature 52 77 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase 1 signature 153 174 - -
Mibi10g0608 993 CDD HMA 220 273 IPR006121 GO:0046872
Mibi10g0608 993 ProSiteProfiles Heavy-metal-associated domain profile. 205 275 IPR006121 GO:0046872
Mibi10g0608 993 SUPERFAMILY HMA, heavy metal-associated domain 52 121 IPR036163 GO:0046872
Mibi10g0608 993 ProSitePatterns Heavy-metal-associated domain. 57 86 IPR017969 GO:0046872
Mibi10g0608 993 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 26 988 - -
Mibi10g0608 993 CDD P-type_ATPase_Cu-like 298 960 - -
Mibi10g0608 993 Gene3D - 128 200 - -
Mibi10g0608 993 Gene3D - 50 123 - -
Mibi10g0608 993 SUPERFAMILY HMA, heavy metal-associated domain 129 201 IPR036163 GO:0046872
Mibi10g0608 993 ProSitePatterns E1-E2 ATPases phosphorylation site. 660 666 IPR018303 -
Mibi10g0608 993 SUPERFAMILY Calcium ATPase, transduction domain A 458 544 IPR008250 -
Mibi10g0608 993 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 410 941 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi10g0608 993 Pfam haloacid dehalogenase-like hydrolase 654 878 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase signature 427 445 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase signature 407 426 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase signature 841 858 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase signature 898 912 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase signature 355 374 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase signature 641 656 - -
Mibi10g0608 993 PRINTS Copper-transporting ATPase signature 937 951 - -
Mibi10g0608 993 SFLD Haloacid Dehalogenase 640 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0608 Mibi-ChrMibi10 13829820 13842825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0608 52 993 Primary Pumps ATPases AT1G63440 70.021 0.0 1375