Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0601 ATGAGACAAGCAGGAGCATATTCAGGGCTACACTGTGGGGGAGTAACAGGGAAGATGGGGCCTCACGCGCTGCCATTAGCGAGGATAAAGAAGATAATGAAGAGATCAGGGGATGATGTCAAGATGATATCAGGCGAAGCTCCTATTGCTTTTGCCAAAGCTTGTGAGCTTTTCATTCAAGAACTCACTAGAAGGTCTTGGATTATGACCACCCATTCCAAACGCAGGACGCTTCTCAAAGACGACGTCGCTTCCGCTGTCGTCGCCACTGATCTTTTTGACTTCCTCATCTCTTTGGTCACCCACCACCATGATGCCTCTCCCTCTCCCTCTCCCTCTACCACCATGGAATCTTAA 357 0.493 MRQAGAYSGLHCGGVTGKMGPHALPLARIKKIMKRSGDDVKMISGEAPIAFAKACELFIQELTRRSWIMTTHSKRRTLLKDDVASAVVATDLFDFLISLVTHHHDASPSPSPSTTMES 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0601 118 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 87 IPR003958 -
Mibi10g0601 118 FunFam Nuclear transcription factor Y subunit C 11 102 - -
Mibi10g0601 118 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 108 - -
Mibi10g0601 118 Gene3D Histone, subunit A 14 102 IPR009072 GO:0046982
Mibi10g0601 118 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0601 Mibi-ChrMibi10 13515289 13515645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0601 22 100 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.557 2.97e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mibi10g0601 CBFD_NFYB_HMF 9.8e-18 CL0012