Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0593 ATGCATCCACTGCCAATTAATGTGGAAACATTAGAAAGCTTGTGTGCTAATGAAATAAGTAGAAGAATGGAGCTTGAAGATTTATTGATTAAGGAAAAGCAAGAATTACAAAAGCTTAAAGATCAGCAAGATGAAATCATGGGAAAACTACAAATGATCCAAAATCAAAATTCAGCATTTGATGACCAAGTTGTGAAGTCCCAGACTGTGGTAGCAGATTTGGAGGAGAAAATTATATCAGCAGTGGGACTCTTGATAAGGTTCAAGGACAAACGAGATAAGTTAAAGATTGAGCATTCTAATGCAGCAAGGGAAGTTAAAAAGTTGAGGAAGTTTGTAAATGCAGATGCTGAATATCCTCACCGAACAGAATTTCCTACATTTTCATTCTTAGAGATCAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTTTTTACAAAGGACTGCTTCGAAATATGCAAGTTGTCATAAAGATGTTGCCCTCTTATGGCTGTCAGAGCCAACCGGAGTTCCAACAAAAGGTTGAGGTTTTGAGTAGGGTAAGACATCCAAACCTTGTAACACTGATTGGAAGCTGCCCAGAATCTAGGTCACTTGTCTATGATTACCTTAATAATGGCAGCCTTGAGGACCACCTTGCCTGTACAAACAAGCCTCCACTTCCTTGGCAAATTCGATTATCCATTTCTGCTGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGCAAGCCTTGTATAATCCATGGGAATTTGAAGCCCAGTAAAATTCTCCTTGATGTAAACTTTGTGGCCAAACTTTGTGATTTGGGCATTTCTTCTTTGGTCCAGTGCGGTGGGCATTCAGCTGATAGTAATAAGTTAGTTGCTAACGGAAGTGAAAGTTTGGTGTATGTGGATCCAGAATTTCTTATCAGTGGGAAGCTTACACCAGAATCAGATGTGTATTCATTTGGAATCATATTGTTACAACTTTTAACTGGCAGACCTCTTTCAGGAATAGTAAGGGATACAAAATGTGCATTGGAGAGAGAAAATCTTAAAACGTTATTGGACATTTCAGCTGGAGAATGGCCACTTGATCAAGTTGAACAGCTAGCATATTTGGCACTAAGGTGTTCTGAGAAGGCTCAGCTGATCCAGCCAGAGCTCTTGTCAGAAATCTTGTGTGTTCTTCGACCATTACGAACTTCATGCAACATGTCGCCATATTCAACTTCCAAGAAGCCTCCACGTCCTCCTCCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAGGACCCTTATATAGCTGCAGATGGCTTTACATACGAAGAAGACGCAATAAGAGGATGGTTGGATAGTGATCATGACACTTCGCCAATGACAAACCTTAAGCTTGAGCACACCAATCTGGTGCCTAATTATGCACTACTTAATGCGATTCAGGAGTGGCAGCACTTGCAATGA 1479 0.4064 MHPLPINVETLESLCANEISRRMELEDLLIKEKQELQKLKDQQDEIMGKLQMIQNQNSAFDDQVVKSQTVVADLEEKIISAVGLLIRFKDKRDKLKIEHSNAAREVKKLRKFVNADAEYPHRTEFPTFSFLEINEATNDFDPSWKIGEGRYGSFYKGLLRNMQVVIKMLPSYGCQSQPEFQQKVEVLSRVRHPNLVTLIGSCPESRSLVYDYLNNGSLEDHLACTNKPPLPWQIRLSISADICSALIFLHSSKPCIIHGNLKPSKILLDVNFVAKLCDLGISSLVQCGGHSADSNKLVANGSESLVYVDPEFLISGKLTPESDVYSFGIILLQLLTGRPLSGIVRDTKCALERENLKTLLDISAGEWPLDQVEQLAYLALRCSEKAQLIQPELLSEILCVLRPLRTSCNMSPYSTSKKPPRPPPHFVCPIFQEVMKDPYIAADGFTYEEDAIRGWLDSDHDTSPMTNLKLEHTNLVPNYALLNAIQEWQHLQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0593 492 SUPERFAMILY RING/U-box 414 489 - -
Mibi10g0593 492 Pfam Protein tyrosine and serine/threonine kinase 145 343 IPR001245 GO:0004672|GO:0006468
Mibi10g0593 492 Gene3D Transferase(Phosphotransferase) domain 1 213 407 - -
Mibi10g0593 492 CDD RING-Ubox_WDSUB1_like 426 467 - -
Mibi10g0593 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 492 IPR013083 -
Mibi10g0593 492 Pfam U-box domain 423 489 IPR003613 GO:0004842|GO:0016567
Mibi10g0593 492 ProSiteProfiles Protein kinase domain profile. 140 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g0593 492 Gene3D Phosphorylase Kinase; domain 1 111 212 - -
Mibi10g0593 492 SUPERFAMILY Protein kinase-like (PK-like) 118 355 IPR011009 -
Mibi10g0593 492 ProSiteProfiles U-box domain profile. 421 492 IPR003613 GO:0004842|GO:0016567
Mibi10g0593 492 PANTHER OS02G0152300 PROTEIN 10 487 - -
Mibi10g0593 492 Coils Coil 22 56 - -
Mibi10g0593 492 SMART Ubox_2 425 488 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0593 Mibi-ChrMibi10 13255328 13261633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0593 8 490 U-box Gene Family AT3G49060 52.361 9.40e-169 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mibi10g0593 PK_Tyr_Ser-Thr 5.2e-33 CL0016