LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g0571	ATGGACTTTCTCAGAGAATACCCTTTCGATGCTTCCTCCTCTTCCTCGGAGGTAACCTCGTCAAGCCGAAAGACGATACCGTTACTGGCGTCGGAGCGACCCAAGAAGCGAGCGGGACGGAGGGTTTTCAAGGAGACGAGGCATCCCATTTACAGAGGAGTACGACGGAGGAACAACGACAAGTGGGTTTGTGAGGTTCGTGTGCCTAACAGTAACACCAGAATTTGGCTCGGAACATATCCAACGGTGGAGATGGCCGCTCGTGCTCATGACGTGGCAGCACTGGCTCTACGTGGCAAGTCGGCATGCCTGAATTTTGCTGACTCAGCATGGCGTTTGCCGGTGCCGGAATCAACAAATGCGGCGGAGATCAGGCGTGTGGCGGCTCTAGCTGCTCAAGAATTCAGAGAGACTAATGATGGTTTTGAAGTTTGCAGTGGCAGTAGTAGTAGTACAACGGTCAACGATGACGTCATGGTTGATGCGTGGAATGTACAGGGTAATAGTGAGGAAGAAGTGTCGTATGTTAATCAAACTCTGGTAGTGTCAACGGCCGAATATGACGATCTCCGTCATTGGCTAGTGAGTATGGCGGAGGAGCCGCTCCGATCGCCACCCGCTTTTGGGCCATATGGTTGGAGCTGGAATGACGTGGAGGTTGATCCTCAGGTATCACTGTGGCAGTATTGA	690	0.5232	MDFLREYPFDASSSSSEVTSSSRKTIPLLASERPKKRAGRRVFKETRHPIYRGVRRRNNDKWVCEVRVPNSNTRIWLGTYPTVEMAARAHDVAALALRGKSACLNFADSAWRLPVPESTNAAEIRRVAALAAQEFRETNDGFEVCSGSSSSTTVNDDVMVDAWNVQGNSEEEVSYVNQTLVVSTAEYDDLRHWLVSMAEEPLRSPPAFGPYGWSWNDVEVDPQVSLWQY	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g0571	229	Gene3D	AP2/ERF domain	50	108	IPR036955	GO:0003700\|GO:0006355
	Mibi10g0571	229	CDD	AP2	49	109	IPR001471	GO:0003700\|GO:0006355
	Mibi10g0571	229	Pfam	AP2 domain	49	99	IPR001471	GO:0003700\|GO:0006355
	Mibi10g0571	229	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	12	229	IPR045277	GO:0003700
	Mibi10g0571	229	MobiDBLite	consensus disorder prediction	9	26	-	-
	Mibi10g0571	229	PRINTS	Ethylene responsive element binding protein signature	73	89	IPR001471	GO:0003700\|GO:0006355
	Mibi10g0571	229	PRINTS	Ethylene responsive element binding protein signature	51	62	IPR001471	GO:0003700\|GO:0006355
	Mibi10g0571	229	ProSiteProfiles	AP2/ERF domain profile.	50	107	IPR001471	GO:0003700\|GO:0006355
	Mibi10g0571	229	SUPERFAMILY	DNA-binding domain	50	109	IPR016177	GO:0003677
	Mibi10g0571	229	FunFam	Ethylene-responsive transcription factor 2	49	108	-	-
	Mibi10g0571	229	MobiDBLite	consensus disorder prediction	1	26	-	-
	Mibi10g0571	229	SMART	rav1_2	50	113	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g0571	Mibi-ChrMibi10	11991999	11992688	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g0571	28	206	AP2-EREBP Transcription Factor Family	AT1G12610	56.983	3.78e-61	189

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi10g0571		AP2	1.2e-13	CL0081