Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0555 ATGGCTCATTTCAATTTTGGTGAAACGCTATCCTTTGGAGGTTCAAACCATGGACTAGGCCAATTAATTGTTCCGTTTAAAACCACTACGAGCTCCCTGAAGGTCTTGCTTCTCCATGGAAACTTAGATATATGCGTGAAAGAGGCAAGAAACCTGCCCAATTTAGACATGTTCCATCAGAAAGCAGGGGATATGATTTCCAGATTACCTGGAAAACTTGGCCAAAGAATTCAAGGGCATATGTCCAATACAATCATTACTAGTGATCCATATGTGACTGTATCTCTGGCTGGTGCTGTAATTGCAAGAACATTTGTGATCCAGAACAATGAGAACCCAAATTGGATGCAGCATTTCAATGTTCCCGTTGCACATCATGCCGCTGAAGTACATTTCGTTGTGAAAGACAGCGATATTGTGGGCTCACAAATCATGGGTGCGGTTGGAATCCCAGTGGAAGAGTTATTCAAAGGCACAAAAATTGAAGGGTCCTTTCCGATCCTTAATTCAAGTGGGAAACCTTGTAAAGATGGAGCTGTCTTGAGTTTATCCATTCAATACATTCCTTTTGATAAGGTGGCTCTTTATGGACATGGAATAGGAGCAGGCCCTAGTTATGAAGGGGTTCCAGGTACATACTTTCCCCTTAGGAAGGGTGGTCGAGTCAGACTTTATCAAGACGCTCATGTACATGGAGGTTCCCTTCTTCCTAATTTGAAGATGGAAGGTGGTGTGAGTTATGAGCATGGAAACTGTTGGCGTGACATTTTTGAGGCAATAAGTCAGGCGCGACGATTAGTATACATTGTGGGGTGGTCTGTGTACTACAATGTTAGATTGGTTCGAGATGGTAAAGATGATGCTAAAGCTTGCACTTTAGGTGAGCTTCTCAAAATCAAATCACAGGAAGGTGTGAGAGTGCTGCTACTTGTGTGGGATGACCCTACTTCTAGAAGCATGATAGGTGGATATAAAACGACTGGACTCATGAACACTCATGATGAGGACACTCTCCAGTTTTTCAAAGGCTCTTCTGTTCAAGTTCTGCTTTGCCCACGTTCAAGTGGAAAAGGACATAGTTGGGTCAAACAACAGGAAGCCGGAACCATCTATACTCATCATCAGAAAACAGTCATTGTAGATGCTGACGCAGACCACCATAGAAGAAAGATTATATCTTTTATTGGAGGTCTTGATTTATGCGATGGCCGATATGATACGCCACAACATCCTCTCTTCAGTACGCTGCAGACAACACACAAAGATGACTATCATAACCCTAACTTTGTGGGGCCTGTTGATGGTTGTCCAAGACAGCCGTGGCATGATTTGCACTCGCTAATAGATGGTCCGGCTGCTTATGACATCCTTGCCAATTTTGAGGAGCGTTGGTTAAAGGCATCAAAGCTGCATGGTCTTAAGAAGATAAAAGGGTCACATGACGATTCACTACTTAAAATCGATAGAATCCCTGATATTCTTGGTATTGCTGATGTTTCTAGTTTGAATGATGATAACCCAGAAGCTTGGCATGTCCAGGTCTTTCGTTCAATTGATTCCAATTCTGTCAAAGGATTTCCCAAGGATCCTAAAGATGCTATAAAAAAGAATTTGGTTTGTGGAAAGAATATAGTGATAGACATGAGCATACATTCTGCTTATGTCAAGGCCATCAGATCTGCCCAAAAGTTCATCTATATTGAGAACCAATACTTTCTTGGCTCGTCATATAATTGGGATTCTCACAAAGACATAGGCGCAAACAATTTAATTCCCATGGAAATCGCTCTTAAAATAGCTTCCAAAATCAAGCAACATGAGAGATTCACTGCTTATATTGTCATTCCTATGTGGCCTGAAGGTGTACCAACAAGTACAGCTACTCAGAGGATTCTCTACTGGCAGTTCAAAACAATGCAAATGATGTACGAGACGGTTTACAGGGCCTTACAGGAGGCTGGACTTGATAATGAGTACGAACCACAGGACTACTTGAATTTCTTTTGCCTCGGCAATCGTGAGGTTCCAGAAAACCAAATCATCGTACGTGCCAGAAATTCCGCTGGAGCAAGCACTGCTCAACCTCAGGCACTTACCCAAAAGAACCGGCGATTCATGATTTATGTTCATTCAAAAGGAATGATAGTGGATGATGAGTATGTAATACTGGGATCTGCAAACATCAACCAAAGATCCATGGAAGGCACCAGAGACACAGAGATAGCAATGGGTGCATATCAGCCTCTTCGTACTTGGGCAAGCAAGCACTCTAGACCTCATGGACAGGTGTATGGATATAGAATGTCACTGTGGGGTGAACATATTGGGAGCATTGAGGAATGTATGAAGGAACCGGAGAGTGTTGAATGCGTGAGACGGGTGCGGCACTTGGGTGAGCAAAACTGGAGACAGTACATGGCTGAAGAGGTAACAGACATGAAGGGGCATTTATTGAAATACCCACTTCAAGTTGATTCGATGGGGAAAGTGAAACCTCTTCCTGGCTGTGAGACATTTCCTGATGTTGGTGGAAACATCAATGGTAGTTTTATTCCCATTCAGGAAAATCTCACCATCTGA 2580 0.4283 MAHFNFGETLSFGGSNHGLGQLIVPFKTTTSSLKVLLLHGNLDICVKEARNLPNLDMFHQKAGDMISRLPGKLGQRIQGHMSNTIITSDPYVTVSLAGAVIARTFVIQNNENPNWMQHFNVPVAHHAAEVHFVVKDSDIVGSQIMGAVGIPVEELFKGTKIEGSFPILNSSGKPCKDGAVLSLSIQYIPFDKVALYGHGIGAGPSYEGVPGTYFPLRKGGRVRLYQDAHVHGGSLLPNLKMEGGVSYEHGNCWRDIFEAISQARRLVYIVGWSVYYNVRLVRDGKDDAKACTLGELLKIKSQEGVRVLLLVWDDPTSRSMIGGYKTTGLMNTHDEDTLQFFKGSSVQVLLCPRSSGKGHSWVKQQEAGTIYTHHQKTVIVDADADHHRRKIISFIGGLDLCDGRYDTPQHPLFSTLQTTHKDDYHNPNFVGPVDGCPRQPWHDLHSLIDGPAAYDILANFEERWLKASKLHGLKKIKGSHDDSLLKIDRIPDILGIADVSSLNDDNPEAWHVQVFRSIDSNSVKGFPKDPKDAIKKNLVCGKNIVIDMSIHSAYVKAIRSAQKFIYIENQYFLGSSYNWDSHKDIGANNLIPMEIALKIASKIKQHERFTAYIVIPMWPEGVPTSTATQRILYWQFKTMQMMYETVYRALQEAGLDNEYEPQDYLNFFCLGNREVPENQIIVRARNSAGASTAQPQALTQKNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPLRTWASKHSRPHGQVYGYRMSLWGEHIGSIEECMKEPESVECVRRVRHLGEQNWRQYMAEEVTDMKGHLLKYPLQVDSMGKVKPLPGCETFPDVGGNINGSFIPIQENLTI 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0555 859 CDD C2_plant_PLD 34 188 - -
Mibi10g0555 859 SMART pld_4 369 404 IPR001736 GO:0003824
Mibi10g0555 859 SMART pld_4 705 732 IPR001736 GO:0003824
Mibi10g0555 859 FunFam Phospholipase D delta 243 483 - -
Mibi10g0555 859 Pfam Phospholipase D Active site motif 706 732 IPR001736 GO:0003824
Mibi10g0555 859 Pfam Phospholipase D Active site motif 370 404 IPR001736 GO:0003824
Mibi10g0555 859 FunFam Phospholipase D 517 751 - -
Mibi10g0555 859 ProSiteProfiles C2 domain profile. 18 165 IPR000008 -
Mibi10g0555 859 SUPERFAMILY Phospholipase D/nuclease 550 749 - -
Mibi10g0555 859 PIRSF PLD_plant 27 859 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Mibi10g0555 859 Gene3D Endonuclease Chain A 512 753 - -
Mibi10g0555 859 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 33 190 IPR035892 -
Mibi10g0555 859 Gene3D C2 domain 23 188 IPR035892 -
Mibi10g0555 859 Gene3D Endonuclease Chain A 240 484 - -
Mibi10g0555 859 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 705 732 IPR001736 GO:0003824
Mibi10g0555 859 SUPERFAMILY Phospholipase D/nuclease 214 469 - -
Mibi10g0555 859 Pfam Phospholipase D C terminal 779 849 IPR024632 -
Mibi10g0555 859 Pfam C2 domain 40 167 IPR000008 -
Mibi10g0555 859 PANTHER PHOSPHOLIPASE D 32 848 IPR015679 -
Mibi10g0555 859 SMART C2_3c 41 164 IPR000008 -
Mibi10g0555 859 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 369 404 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0555 Mibi-ChrMibi10 11458368 11463151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0555 32 859 Phospholipase D Gene Family (Wang group) AT2G42010 70.505 0.0 1283