Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0549 ATGGTGAGGGGAAAAACTGAGATGAAGCGAATTGAGAATGATACGAGCAGGCAAGTAACGTTCTCAAAGAGAAGGAATGGGTTGTTGAAGAAGGCGTTTGAGCTTTCTGTACTGTGTGAAGCAGAAGTTGCACTCATAATTTTCTCGCCCAGAGGAAAACTCTATGAATACGCCAGTTCTAGTATAAACAAAACAGTTGAACGCTATCAAAAAAAAGTCAGAGACCTGGGTCTCTACTCCAGAGGAATTCAACATAACGTACAGCATTCTAGGGATGGAACCATCAGCATACAAAAGAAGCTTGAGCATCTCGACATTTCTAAAAGGAAGCTTTTGGGAGATTGTTTGGGTGCATGTTCCATTGAGGAGTTAAATCAAATGGAGAACCAGCTGGAGCGCAGCTTAACCAAAATTAGGGCAAGAAAGAATCAATTGTTCCGAGAGGAGATTGAGCAACTAAAGGAAGAGGAAAAATGCCTTCTGGAAGAGAATAAGAAGTTACTAGAGCAGTGTGGGATTGAAAAGCGAGGATCAACGATAGAAGAGGATGGGTATGAGAATGAGGTGGTGACGGAGTTGTTCATATGGCCACCTGAGAGACGAATCCCTTGA 612 0.4265 MVRGKTEMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPRGKLYEYASSSINKTVERYQKKVRDLGLYSRGIQHNVQHSRDGTISIQKKLEHLDISKRKLLGDCLGACSIEELNQMENQLERSLTKIRARKNQLFREEIEQLKEEEKCLLEENKKLLEQCGIEKRGSTIEEDGYENEVVTELFIWPPERRIP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0549 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi10g0549 203 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Mibi10g0549 203 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Mibi10g0549 203 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Mibi10g0549 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi10g0549 203 Coils Coil 121 170 - -
Mibi10g0549 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi10g0549 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi10g0549 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi10g0549 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi10g0549 203 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi10g0549 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Mibi10g0549 203 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Mibi10g0549 203 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi10g0549 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0549 Mibi-ChrMibi10 11195133 11205532 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0549 1 201 MADS-box Gene Family AT4G11880 62.911 2.65e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi10g0549 K-box 6.9e-23 No_clan