Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0540 ATGGATCGTACCTTCGTGGGCAACACGAAGGCATTTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATAAGAATGCTTCATGTGCAAGTCAATGAACATATCTATCATATAATCGCATCATATCCAAAACGCTCAAACATGGCTTCCATCCTTCGCTTTGGTAGCTTTTTCTTACTATCATGGATCCTAACACTCGTTGGAAACCCGACCACCGCAGATGGAGTTTTCCGACCAGAACCATGGTCTCTTGCTCATGCCACCTTTTATGGCGACGAGACTGCTTCTGCCACAATGGGAGGAGCATGTGGGTACGGGAACTTGTTCATGAATGGATACGGCACAGACACAGCAGCACTGAGCTCAACACTCTTCAACAATGGCTTCGCTTGTGGCACATGTTACCAAATCAAATGCTACCAATCAAGTGCATGTCACAAAGACGTCATGTTCACCACCGTGACGGCAACCAACCTCTGCCCACCAAATTGGGCGGAACCGTCCGACAACGGCGGGTGGTGCAACCCGCCACGTGTACATTTCGATATGTCAAAGCCGGCATTCATGAAAATAGCCGACTGGAAGGCCGGCATCGTGCCGATGGTGTACCGGCGAGTGCCGTGCCAGAGAAACGGAGGGCTGAGATTTGCTTTCCAAGGGAATGGGTATTGGTTGCTTGTGTATGTGATGAATGTGGGAGGAGGGGGAGATATAGGAAGTATGTGGGTGAAAGGAAGTAAAACTGGATGGATTAGTATGACTCATAATTGGGGAGCTTCGTACCAAGCTTTTGCCACATTAGGTGGACAAGATTTGTCGTTTAAGATAACGTCGTACACTACAAAACAGACTGTTATAGCTTGGAATGTTGCTCCTTCTGGTTGGTCTGTTGGTCTCACTTATTCCTCCAACATTAACTTTTACTGA 942 0.4671 MDRTFVGNTKAFCSLSLSLSLSLYIYIYIRMLHVQVNEHIYHIIASYPKRSNMASILRFGSFFLLSWILTLVGNPTTADGVFRPEPWSLAHATFYGDETASATMGGACGYGNLFMNGYGTDTAALSSTLFNNGFACGTCYQIKCYQSSACHKDVMFTTVTATNLCPPNWAEPSDNGGWCNPPRVHFDMSKPAFMKIADWKAGIVPMVYRRVPCQRNGGLRFAFQGNGYWLLVYVMNVGGGGDIGSMWVKGSKTGWISMTHNWGASYQAFATLGGQDLSFKITSYTTKQTVIAWNVAPSGWSVGLTYSSNINFY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0540 313 PRINTS Expansin signature 176 193 IPR002963 GO:0009664
Mibi10g0540 313 PRINTS Expansin signature 217 229 IPR002963 GO:0009664
Mibi10g0540 313 PRINTS Expansin signature 157 167 IPR002963 GO:0009664
Mibi10g0540 313 PRINTS Expansin signature 229 250 IPR002963 GO:0009664
Mibi10g0540 313 PRINTS Expansin signature 117 131 IPR002963 GO:0009664
Mibi10g0540 313 PRINTS Expansin signature 193 206 IPR002963 GO:0009664
Mibi10g0540 313 PRINTS Expansin signature 294 310 IPR002963 GO:0009664
Mibi10g0540 313 Pfam Expansin C-terminal domain 220 297 IPR007117 -
Mibi10g0540 313 Gene3D - 218 313 IPR036749 -
Mibi10g0540 313 PRINTS Expansin/Lol pI family signature 86 101 IPR007118 GO:0005576
Mibi10g0540 313 PRINTS Expansin/Lol pI family signature 126 144 IPR007118 GO:0005576
Mibi10g0540 313 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Mibi10g0540 313 PRINTS Expansin/Lol pI family signature 294 308 IPR007118 GO:0005576
Mibi10g0540 313 PRINTS Expansin/Lol pI family signature 104 122 IPR007118 GO:0005576
Mibi10g0540 313 PRINTS Expansin/Lol pI family signature 201 217 IPR007118 GO:0005576
Mibi10g0540 313 SUPERFAMILY PHL pollen allergen 215 308 IPR036749 -
Mibi10g0540 313 PANTHER EXPANSIN-A15 74 308 IPR002963 GO:0009664
Mibi10g0540 313 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 228 308 IPR007117 -
Mibi10g0540 313 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 105 218 IPR007112 -
Mibi10g0540 313 SMART dpbb_1 122 208 IPR007112 -
Mibi10g0540 313 SUPERFAMILY Barwin-like endoglucanases 86 236 IPR036908 -
Mibi10g0540 313 Pfam Lytic transglycolase 122 208 IPR009009 -
Mibi10g0540 313 Gene3D - 73 214 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0540 Mibi-ChrMibi10 10752520 10754170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0540 53 312 Expansin Gene Family AT1G12560 63.846 3.74e-123 352