LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g0506	ATGGATTCTGTTCATTTCCTGGTTTCTCTGTTTCTTCTCTTGCTTGTAGAATTTCATAGCCTACAACCTGTTCTAGGAAATGCCGAGCTGAAAGCTTTAATGGAGTTGAAGTCTTCTCTGGACCCAGAGGGCAATGTTCTTGGTTCTTGGACCAGTGATGGTAATCCATGTGGTGGTTTGTTTGAAGGGGTAGCATGCAACGAGCACAGAAAAGTGGCAAATATTTCGTTGCAGGGAAAGGGTCTTTCTGGATGGCTCTCTCCAGCTGTTGTTGAACTCAAATGTTTGTCCGGTTTATACCTTCACTATAACAATCTCTCTGGGGAGATCCCCAGAGAGATTTCAAATCTCACTGACTTGATTGATCTCTATCTTGACTTTAATAATCTAACTGGAAACATACCTCCTGAACTCGGCAACATGCCTAATCTCCAAGTGCTGCAATTAGGATATAACCAGCTGGTGGGAACTATACCAAAAGAGATGGGTTACTTGAAGCAGCTTACTGCCTTAGAATTGCAATGTAACAAATTAAGTGGTACAATTCCTCTCAGCTTAGGAAATTTGGAGAAGCTAAGGATGCTAAACCTGAGCTTTAACAGCTTCAATGGTTCAATTCCCGCAACGATTGCTGACCTTTCAGAGTTGAAAATTCTCGATATCCGTAACAATTCTCTGTCAGGAAGGGTTCCTTCTGCTTTGAAGACATTGAGGGATGGATTCCAAGGTGAAAATAACCTGGATTTATGTGGACATGGGTTTTCTACTTTGAAAGCTTGCAACAATGATCCAACTTTAAACCCTAGTCAGATTGACACCTCAAATCCAACAACCAAAGAAGGTATTCCTGCAAAAAATTTTCCCGAACCAGCAAATTTTCGGCATCATTGTAACCAGAACCATTGCACAAGGTCAAGATTGTTCCCTCAAGCACTCATAGCAGCAAGTGTTATAACCATCATAGTCACATTCGTATGCGCTGGACTTTTCACTTTTCTCAAATATCGCCGTCAAAAGCAAAGAATTAGAAATTCATCAGAATCTTCTGAAGGGAAACTTAGTCCTGATCAGCCTAAACAACTGTACAAAAGAAGTCCATCGCCCCTCGTTAATCTTAACTACTATAATGGATGGGATCCAATGGCTGATGCTCAAAATGGAAGTAAATTATCCCATGAGTTTCTAAACCGTTTTAGATTTACTGTTGATGAGATTGAATCTGCCACACAGTACTTCTCTGAGGCTAACTTATTAAGTAAGAGCAAATTATCATCAGTCTACAAAGGAATCCACAGGGATGGCTCACTTGTAGCTATAAGAAGCATTAATGTGACATGTTGCAAGACTGAGGAAGATGAATTTGTAGATGGGTTGAACTTAGTACTTTCATTGAGACATGAAAATTTAGTTAGGCTCAGAGGTTTCTGTTGCTCAGCAAGTAGAGGTGAATGTTTCCTTGTCTATGACTTTGCCCCTAAAGGTGACCTGTCTCAATACCTTGACATGGAAGATGGAAGTGGTCAGATTCTTGAGTGGTCTAAAAGGGTTTCTATCATCAAGGGCATTGCAAAAGGTATTGGATATCTACACAGCAACGAAACAAACAAGCCAACAATGGTACACCAAAATATCTCCGTTGAAAAGGTTGTGCTTGACCATCAATTAAACCCCATGATAATGGATTCTGGCCTCCCAAAGCTTCTCGCAGACGACGCAGTTTTCTCGGCTCTGAAAGTAAGTGCTGCCATGGGATACTTGGCACCTGAATACATTACTACTGGGAGATTCACTGAGAAAAGTGACATATATGCATTTGGGGTTATAATCCTTCAAGTAGTTTCTGGGAAAACTGTTATAGGTAGTTCAATCAAGATGGCAGTTGAATCTTTCAGATTTGAAGACTTTGTTGATTCAAATCTGAAGGGACGATACGCAAAATCTGAAGCAGCAATGCTCGCAAAGCTCGCGGTGATGTGTACTCATGAGCTTCCTGACCAGAGGCCGACTATGGTGGAAGTGATTCAGGAGATGAATGCATTTCCTGCTCAACATACTTCTTGA	2061	0.4105	MDSVHFLVSLFLLLLVEFHSLQPVLGNAELKALMELKSSLDPEGNVLGSWTSDGNPCGGLFEGVACNEHRKVANISLQGKGLSGWLSPAVVELKCLSGLYLHYNNLSGEIPREISNLTDLIDLYLDFNNLTGNIPPELGNMPNLQVLQLGYNQLVGTIPKEMGYLKQLTALELQCNKLSGTIPLSLGNLEKLRMLNLSFNSFNGSIPATIADLSELKILDIRNNSLSGRVPSALKTLRDGFQGENNLDLCGHGFSTLKACNNDPTLNPSQIDTSNPTTKEGIPAKNFPEPANFRHHCNQNHCTRSRLFPQALIAASVITIIVTFVCAGLFTFLKYRRQKQRIRNSSESSEGKLSPDQPKQLYKRSPSPLVNLNYYNGWDPMADAQNGSKLSHEFLNRFRFTVDEIESATQYFSEANLLSKSKLSSVYKGIHRDGSLVAIRSINVTCCKTEEDEFVDGLNLVLSLRHENLVRLRGFCCSASRGECFLVYDFAPKGDLSQYLDMEDGSGQILEWSKRVSIIKGIAKGIGYLHSNETNKPTMVHQNISVEKVVLDHQLNPMIMDSGLPKLLADDAVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVVSGKTVIGSSIKMAVESFRFEDFVDSNLKGRYAKSEAAMLAKLAVMCTHELPDQRPTMVEVIQEMNAFPAQHTS	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g0506	686	FunFam	Protein NSP-INTERACTING KINASE 2	491	681	-	-
	Mibi10g0506	686	SUPERFAMILY	L domain-like	29	237	-	-
	Mibi10g0506	686	Gene3D	Phosphorylase Kinase; domain 1	380	490	-	-
	Mibi10g0506	686	ProSiteProfiles	Protein kinase domain profile.	412	680	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi10g0506	686	SUPERFAMILY	Protein kinase-like (PK-like)	388	677	IPR011009	-
	Mibi10g0506	686	Gene3D	Ribonuclease Inhibitor	142	261	IPR032675	-
	Mibi10g0506	686	Pfam	Protein tyrosine and serine/threonine kinase	418	676	IPR001245	GO:0004672\|GO:0006468
	Mibi10g0506	686	Gene3D	Ribonuclease Inhibitor	28	141	IPR032675	-
	Mibi10g0506	686	MobiDBLite	consensus disorder prediction	347	365	-	-
	Mibi10g0506	686	Pfam	Leucine rich repeat	167	226	IPR001611	GO:0005515
	Mibi10g0506	686	MobiDBLite	consensus disorder prediction	341	365	-	-
	Mibi10g0506	686	FunFam	Protein NSP-INTERACTING KINASE 2	26	175	-	-
	Mibi10g0506	686	Gene3D	Transferase(Phosphotransferase) domain 1	491	683	-	-
	Mibi10g0506	686	FunFam	Protein NSP-INTERACTING KINASE 2	383	490	-	-
	Mibi10g0506	686	Pfam	Leucine rich repeat N-terminal domain	27	67	IPR013210	-
	Mibi10g0506	686	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	72	678	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g0506	Mibi-ChrMibi10	9600331	9604856	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g0506	4	525	Miscellaneous Gene Families	AT4G22730	55.121	0.0	566

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IV	Mibi10g0506		PK_Tyr_Ser-Thr	7.1e-33	CL0016